Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L08
(313 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 29 0.52
AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math ... 29 0.68
AC006630-8|AAK68330.1| 232|Caenorhabditis elegans Hypothetical ... 29 0.90
U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical pr... 28 1.6
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein. 27 2.8
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno... 27 2.8
U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical pr... 27 3.6
DQ338465-1|ABC67522.1| 690|Caenorhabditis elegans KEL-8 protein. 27 3.6
AF317421-1|AAK69599.1| 235|Caenorhabditis elegans lysosomal-ass... 27 3.6
AF067946-5|AAC17684.4| 690|Caenorhabditis elegans Hypothetical ... 27 3.6
Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical pr... 26 4.8
Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical pr... 26 4.8
AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain po... 26 4.8
AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm rece... 26 4.8
Z81470-1|CAB03881.1| 321|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 26 6.4
U64441-1|AAB06457.1| 549|Caenorhabditis elegans nonsense-mediat... 26 6.4
U64440-1|AAB06456.1| 549|Caenorhabditis elegans nonsense-mediat... 26 6.4
AF100675-2|AAC69004.1| 451|Caenorhabditis elegans Hypothetical ... 26 6.4
AF016680-1|AAB66163.2| 458|Caenorhabditis elegans Synaptotagmin... 26 6.4
AF003141-6|AAK21489.1| 549|Caenorhabditis elegans Suppressor wi... 26 6.4
Z75542-3|CAA99860.1| 359|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z54342-10|CAE17684.1| 131|Caenorhabditis elegans Hypothetical p... 25 8.4
AL032656-4|CAB60309.2| 407|Caenorhabditis elegans Hypothetical ... 25 8.4
AF003132-1|AAB54133.3| 798|Caenorhabditis elegans Hypothetical ... 25 8.4
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 29.5 bits (63), Expect = 0.52
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 214 SATILIICSYRTP*SWDHSGGENARNKE 131
SA ++ +Y TP WD SGGE R +E
Sbjct: 500 SAPFIVKWAYATPRRWDGSGGEPPRYEE 527
>AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math
domain containingprotein 25 protein.
Length = 364
Score = 29.1 bits (62), Expect = 0.68
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 85 TGSTAAGNNESKFDNTPCFVRSRRRYGP 168
T ST + + KF N C V +RYGP
Sbjct: 2 TNSTRKFSLKQKFTNVSCMVNHEKRYGP 29
>AC006630-8|AAK68330.1| 232|Caenorhabditis elegans Hypothetical
protein F14H12.8 protein.
Length = 232
Score = 28.7 bits (61), Expect = 0.90
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 234 AHILIFAVLLFSLFVVTERLDLGTIAAARTHETRSI 127
AHI+IF V++ LFV ++ + A T + R+I
Sbjct: 118 AHIIIFFVVMIILFVFLSNINSSYVRRATTEKLRNI 153
>U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical
protein ZC449.1 protein.
Length = 454
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +2
Query: 44 LSHHYFIHSFVFRLPAAPQPAIMNRSLIILLVSCVLAAAMVPRSRRSVTTNNENSSTANI 223
L + I++ F LP +P N + IL V L+ RR +TT +S T +
Sbjct: 291 LENEKVIYAEKFCLPESPF-VCQNDEIFILHVQKTLS------KRRRITTKAASSITDCL 343
Query: 224 KICAPQTPCAWSVY 265
+ C Q C SVY
Sbjct: 344 RKCLEQDDCRSSVY 357
>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
Length = 1040
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 94 TAAGNNESKFDNTPCFVRSRRRYGPKI 174
T AGN+ S+++N FV GP+I
Sbjct: 826 TTAGNSSSRYENVDRFVAELGNLGPQI 852
>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
abnormal morphology protein19 protein.
Length = 1040
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 94 TAAGNNESKFDNTPCFVRSRRRYGPKI 174
T AGN+ S+++N FV GP+I
Sbjct: 826 TTAGNSSSRYENVDRFVAELGNLGPQI 852
>U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical
protein C05E11.3 protein.
Length = 235
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 39 CIYLITISF--IHSYFVYRQHRSR 104
C++++ I F IHS FVY QH R
Sbjct: 56 CVHVLMILFFLIHSLFVYFQHDGR 79
>DQ338465-1|ABC67522.1| 690|Caenorhabditis elegans KEL-8 protein.
Length = 690
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 134 LVSCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQTPCAWSVYRPTGR 280
++S ++ AM P R+ +N+EN+S + + P + S T R
Sbjct: 329 IISAMVLDAMTPSKRKHPESNHENTSEYSASMACPSLTASSSSSTSTFR 377
>AF317421-1|AAK69599.1| 235|Caenorhabditis elegans
lysosomal-associated transmembraneprotein protein.
Length = 235
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 39 CIYLITISF--IHSYFVYRQHRSR 104
C++++ I F IHS FVY QH R
Sbjct: 56 CVHVLMILFFLIHSLFVYFQHDGR 79
>AF067946-5|AAC17684.4| 690|Caenorhabditis elegans Hypothetical
protein W02G9.2 protein.
Length = 690
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 134 LVSCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQTPCAWSVYRPTGR 280
++S ++ AM P R+ +N+EN+S + + P + S T R
Sbjct: 329 IISAMVLDAMTPSKRKHPESNHENTSEYSASMACPSLTASSSSSTSTFR 377
>Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical
protein K10D11.3 protein.
Length = 699
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 206 SSTANIKICAPQTPCAWSVYRPTG 277
+ T N + AP C+W++Y P G
Sbjct: 252 NQTLNPPMYAPNQMCSWTIYIPMG 275
>Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical
protein F56H11.4 protein.
Length = 288
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 53 HYFIHSFVFRLPAAPQPAIMNRSLIILLVSCVLAA 157
+YF+ S R+P AI + ++ ++SC + A
Sbjct: 194 YYFLRSMKIRVPGFIAQAITSLQIVQFIISCAVLA 228
>AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain
polyunsaturated fattyacid elongation enzyme protein.
Length = 288
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 53 HYFIHSFVFRLPAAPQPAIMNRSLIILLVSCVLAA 157
+YF+ S R+P AI + ++ ++SC + A
Sbjct: 194 YYFLRSMKIRVPGFIAQAITSLQIVQFIISCAVLA 228
>AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm
receptor protein 66 protein.
Length = 331
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 39 CIYLITISFIHSYFVYR 89
C YL T SFI F+YR
Sbjct: 96 CFYLTTFSFISVLFIYR 112
>Z81470-1|CAB03881.1| 321|Caenorhabditis elegans Hypothetical
protein C14A6.1 protein.
Length = 321
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/48 (27%), Positives = 19/48 (39%)
Frame = +2
Query: 131 LLVSCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQTPCAWSVYRPT 274
L V+ V+ A P + T + IK C P W+ + PT
Sbjct: 145 LCVTPVIMTATCPPITTPIPTTCPTPAPCPIKQCVPSCDQGWTYFSPT 192
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 20 LVPMRTLHLSHHYFIHSFVFRLPAAPQPAIMNRSLIILLVSCVLAAAMVP 169
++P + ++H ++ V R+P A N SL LL+S AAA P
Sbjct: 138 IIPFTSNVATNHPHLNHHVSRIPQAIVTGGTNGSLPPLLISPTSAAAATP 187
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 20 LVPMRTLHLSHHYFIHSFVFRLPAAPQPAIMNRSLIILLVSCVLAAAMVP 169
++P + ++H ++ V R+P A N SL LL+S AAA P
Sbjct: 138 IIPFTSNVATNHPHLNHHVSRIPQAIVTGGTNGSLPPLLISPTSAAAATP 187
>U64441-1|AAB06457.1| 549|Caenorhabditis elegans nonsense-mediated
mRNA decay proteinprotein.
Length = 549
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 229 YLDICSATILIICSYRTP*SWDHSGGENARNKEYYQTSIHYCRLRCCR*TKYE*MNEIVM 50
Y+ I S TI C SW E + + + H+ +L TK+ +N++VM
Sbjct: 272 YITIYSRTISSKCLLAEAISWISDSAEILGHLDEQKNEPHFQKLSVFAKTKWNELNDLVM 331
>U64440-1|AAB06456.1| 549|Caenorhabditis elegans nonsense-mediated
mRNA decay proteinprotein.
Length = 549
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 229 YLDICSATILIICSYRTP*SWDHSGGENARNKEYYQTSIHYCRLRCCR*TKYE*MNEIVM 50
Y+ I S TI C SW E + + + H+ +L TK+ +N++VM
Sbjct: 272 YITIYSRTISSKCLLAEAISWISDSAEILGHLDEQKNEPHFQKLSVFAKTKWNELNDLVM 331
>AF100675-2|AAC69004.1| 451|Caenorhabditis elegans Hypothetical
protein Y55H10A.1 protein.
Length = 451
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 134 GVLSNFDSLLPAAVLPVNEIRMNE*NSDEINARCASARGG 15
G++++ D++ V + +E NSD N+ A A GG
Sbjct: 141 GIITSTDAVAHEKSSRVKRVATDEFNSDSENSAAAEANGG 180
>AF016680-1|AAB66163.2| 458|Caenorhabditis elegans Synaptotagmin
protein 5 protein.
Length = 458
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +2
Query: 128 ILLVSCVL---AAAMVPRSRRSVTTNNENSSTANIKICAPQTPCAWSVYRPTGRIIHMNI 298
++L SC L A V + +R V + +S IK+ PQ+ S+ + G +
Sbjct: 18 VILSSCALYFGARICVRQIKRKVKYSEVPTSVPEIKVSVPQSASTLSISKMNGSYRARVL 77
Query: 299 ATNYC 313
+ N C
Sbjct: 78 SRNGC 82
>AF003141-6|AAK21489.1| 549|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 5 protein.
Length = 549
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 229 YLDICSATILIICSYRTP*SWDHSGGENARNKEYYQTSIHYCRLRCCR*TKYE*MNEIVM 50
Y+ I S TI C SW E + + + H+ +L TK+ +N++VM
Sbjct: 272 YITIYSRTISSKCLLAEAISWISDSAEILGHLDEQKNEPHFQKLSVFAKTKWNELNDLVM 331
>Z75542-3|CAA99860.1| 359|Caenorhabditis elegans Hypothetical
protein F55D12.3 protein.
Length = 359
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = -1
Query: 241 LRRTYLDICSATILII---CSYRTP*SWDHSGGE--NARNKEYYQTSIHYCR 101
+ + +D+ S +L+I C+ +T + SG K+Y T HYCR
Sbjct: 251 IENSNVDLLSKRVLLIRMGCTEKTAPNMSKSGAMILTEYQKKYSNTLFHYCR 302
>Z54342-10|CAE17684.1| 131|Caenorhabditis elegans Hypothetical
protein C08H9.15 protein.
Length = 131
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 246 GVCGAHILIFAVLL 205
G CGA ILIF+VLL
Sbjct: 94 GTCGAIILIFSVLL 107
>AL032656-4|CAB60309.2| 407|Caenorhabditis elegans Hypothetical
protein Y106G6E.6 protein.
Length = 407
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 88 GSTAAGNNESKFDNTPCFVRSRRRY 162
G TAAG+N S CF R RR++
Sbjct: 374 GRTAAGDNSSGEVKCCCFRRRRRKH 398
>AF003132-1|AAB54133.3| 798|Caenorhabditis elegans Hypothetical
protein F37E3.1 protein.
Length = 798
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 74 VFRLPAAPQPAIMNRSLIILLV 139
+ RLP AP PAI + SL++ L+
Sbjct: 363 MLRLPHAPYPAIFHCSLVLELL 384
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,463,926
Number of Sequences: 27780
Number of extensions: 145606
Number of successful extensions: 442
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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