Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L07
         (340 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   0.65 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   4.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   8.0  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +3

Query: 129 VKLIDEVIYEVTGKTVIRTQDDIHIDGF-NPSAEEADEGTDSNVETGVDIVLN 284
           + LIDE+ Y      +I   DDI    F N     AD   +      VDI LN
Sbjct: 525 ISLIDEISYMAPPAPLISQYDDIDPQQFCNGDNRPADCQQNCMCTHKVDIPLN 577


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 218 GVKSINVDIVLCSDHGLAGDFINNFVDQLNFI-RIREHLVTSYNILIDYHFDGLE 57
           G+K +N  + +    G   D  + F   ++   R RE + ++   +  Y+FDG++
Sbjct: 240 GLKRVNPKLKVLISVGEGRDGSHRFSTMVSSANRRREFIRSAITFIKQYNFDGMD 294



 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 184 HKTISTLMDLTPRPRRLTKGRIPTW 258
           H T+   + LTP  +R+    IP++
Sbjct: 5   HITLCAFLILTPTDQRVVTRTIPSF 29


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 263 WCRHSPESQASRN 301
           WC +S  S ASR+
Sbjct: 147 WCNYSAYSSASRH 159


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 172 VLPVTS*ITSSINLTLYVSENISSPVITS 86
           +L  TS    SIN     S + SSP +T+
Sbjct: 150 ILTKTSPTPVSINNNTSTSSSASSPSVTA 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,807
Number of Sequences: 336
Number of extensions: 1825
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)