Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L06
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   0.46 
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   1.4  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   1.8  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   1.8  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   2.4  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   2.4  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   3.2  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    24   4.3  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    24   5.6  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   5.6  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    24   5.6  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    23   7.5  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    23   7.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    23   7.5  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    23   7.5  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    23   9.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    23   9.9  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    23   9.9  

>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 0.46
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +2

Query: 128 KDTVKKSTVRFWFQRFRSGNFDLQNEPREQGVDN-EELTASIEPD----LSQTPQDIATV 292
           K T +KS  RF F  FRS +   + EP E G D+ E  TA I  D    + Q    IAT+
Sbjct: 321 KYTRRKSLFRFPF--FRSISGKKKEEPMESGTDSLESSTAQITVDSQLKIKQLETQIATL 378


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 239 LILHCQHLVHGVRSVGQNFRNENVETKNVPCFFLQY 132
           L+ HC+H  H    +  +FRN +    +    FL Y
Sbjct: 476 LVFHCEHSAHRAPHLALHFRNTDRRMNSHRYPFLYY 511


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 257 PVLCSPLILHCQHLVHGVRSVGQNFRNENVETKNV 153
           P +  P+ +HC HL+        +    NV  K V
Sbjct: 112 PEVAVPVTVHCDHLIEAYEGGPIDLERANVTNKEV 146


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 248 CSPLILHCQHLVHGVRSV---GQNFRNENVETKNVPCF 144
           C+P +   Q ++ G+  V   G+NFRNE ++  + P F
Sbjct: 257 CAPELWLKQLVIGGMNRVFELGKNFRNEGIDATHNPEF 294


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 118 VIYPSSCLCSASSTMELVFINKAIFPVFH 32
           +++P+S   SA +  +L +    I PVFH
Sbjct: 739 LLFPASLKRSAKNIFDLAYQLNGILPVFH 767


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 237 NSSLSTPCSRGSFCRSKFPERKR*NQKRTV--LFFTVSFPYTSFILRAV 97
           N  L  P S  S   SK P RK+   K TV    FT     +SF+L  +
Sbjct: 341 NDHLKIPQSPSSLSPSKIPIRKKRKLKDTVSNCEFTEEDSESSFLLETI 389


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 22  WKWNGKLEI-SLYL*IRVPSWNLRYTNSSKDK*RVWERYCKKK 147
           +K NGK    SLY  IR+ S+N +     K   + W +Y   K
Sbjct: 27  YKPNGKTSCCSLYT-IRLDSYNFKIAKEQKKAIKKWVKYVNGK 68


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 113 NDVYGKDTVKKSTVRFWFQR 172
           +D+YGK T  KST++F  ++
Sbjct: 141 DDLYGKITEVKSTIKFQLKK 160


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 179 NENVETKNVPCFFLQYLSHTRHLSFEL 99
           +++ ET+ + CF    L+H  HLSF++
Sbjct: 134 SKSAETR-IQCFKWFVLAHNAHLSFDV 159


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 151 RAFFYSIFPIHVIYPS 104
           R FF+ I P H++Y S
Sbjct: 128 RLFFFRIIPSHILYNS 143


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 19  KWKWNGKLEIS 51
           +WKWNG+  IS
Sbjct: 251 EWKWNGRASIS 261


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = -3

Query: 242 PLILHCQHLVHGVRSVGQNFRNENVETKNV 153
           P  +HC HL+ G R    +  +     K +
Sbjct: 121 PASIHCDHLIVGHRGANSDIPDSIANNKEI 150


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 17  ESGSGMENWKYRFIYEYEFHR-GTCATQTARRI 112
           E+GSG      +F+YE  +HR G       RR+
Sbjct: 516 ETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRV 548


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 270 VCDRSGSMLAVNSSLSTPCSR 208
           V D SGS  +V++S STP S+
Sbjct: 132 VADASGSKYSVHTSNSTPQSK 152


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 20  SGSGMENWKYRFIYEYEFHRGTCATQ 97
           +G  + +W    +Y +EFHRGT  TQ
Sbjct: 541 AGQTLPSWNGE-LY-FEFHRGTYTTQ 564


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 161 KNVPCFFLQYLSHTRHLSF 105
           K +P  F+ Y+ +TR LSF
Sbjct: 243 KGLPEEFITYMCYTRQLSF 261


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -3

Query: 215  VHGVRSVGQNFRNENVETKNVPCFFLQYLSHTRH 114
            +H  + + +  +  N+E + +    +QYLS+  H
Sbjct: 970  IHDHKMLEEKLQESNIEAQRIVRSKMQYLSNMSH 1003


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 195 RSKFPERKR*NQKRTVLFFTVSFPYTSFILR 103
           R +FP  K  N KR  +F      + +FILR
Sbjct: 312 RIRFPFHKSINHKRFPMFIYAIGCFINFILR 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,505
Number of Sequences: 5004
Number of extensions: 27489
Number of successful extensions: 97
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)