Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L06
(304 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0609 + 22710442-22713502,22713596-22713948 27 2.1
10_07_0075 + 12627131-12627389,12627476-12627691,12627775-126279... 27 3.7
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 26 4.9
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 26 4.9
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 26 4.9
02_01_0422 - 3084940-3087072 26 4.9
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 26 4.9
01_06_1478 - 37648781-37649113,37649200-37649455,37649954-376500... 26 4.9
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 26 6.5
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 26 6.5
02_04_0108 + 19808539-19808761,19809054-19809697,19809785-198098... 26 6.5
01_05_0490 + 22672241-22674679 26 6.5
>06_03_0609 + 22710442-22713502,22713596-22713948
Length = 1137
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -2
Query: 222 TPCSRGSFCRSKFPERKR*NQKRTVLFFTVSFPYTSFILRAVCVAQV 82
TP + C SK ++KR + + VL T+ P + +C+A++
Sbjct: 745 TPTTGMPLC-SKLVDKKRNHSRSLVLVLTIVIPIVAITFTLLCLAKI 790
>10_07_0075 +
12627131-12627389,12627476-12627691,12627775-12627923,
12628004-12628315
Length = 311
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = -3
Query: 257 PVLCSPLILHCQHLVHGVRSVGQNFRNENVETKNVPCFFLQYLSHTRHLSFELFV*RKFH 78
P+ C P +L L HG RS + + + T + F H R L+ L R+ H
Sbjct: 225 PIGCEPRVLELFKLKHG-RSTAGDDSDYDAATGCLKSFNELAEQHNRALTAALDELRRAH 283
Query: 77 DGTRI 63
GT I
Sbjct: 284 PGTAI 288
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 89 ATQTARRINDVYGKDTVKKSTVRFWFQRFRSGNFDLQNEPREQGVDNEEL 238
A ++ + ND YG ++KS F NF ++ EP+ + D+ E+
Sbjct: 695 ANKSMLKCNDDYGFTDLQKSE-----DEFGQHNFQIKEEPKNESSDDYEM 739
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 221 HLVHGVRSVGQNFRNE--NVETKNVPCFFLQ 135
H+VH +R + Q +NE N + +N+ FLQ
Sbjct: 166 HIVHSIRRMNQTHKNEARNRKLQNILFTFLQ 196
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 275 AGFATDPVLCSPLILH 228
+ FA +P LCSP++LH
Sbjct: 909 SSFAGNPKLCSPMLLH 924
>02_01_0422 - 3084940-3087072
Length = 710
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 275 AGFATDPVLCSPLILH 228
+ FA +P LCSP++LH
Sbjct: 645 SSFAGNPELCSPILLH 660
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 275 AGFATDPVLCSPLILH 228
+ FA +P LCSP++LH
Sbjct: 656 SSFAGNPKLCSPMLLH 671
>01_06_1478 -
37648781-37649113,37649200-37649455,37649954-37650066,
37650312-37650689,37650822-37650999,37651429-37651565,
37651993-37652155,37652531-37652688,37652819-37652923,
37653106-37653253,37653816-37654132
Length = 761
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 119 VYGKDTVKKSTVRFWFQRFRSGNFDLQNEPREQGVDNEE 235
V G + VR W R R D N RE+G EE
Sbjct: 21 VVGLADAVQERVRSWLSRARGAIADAANAAREKGRSKEE 59
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 89 ATQTARRINDVYGKDTVKKSTVRFWFQRFRSGNFDLQNEPREQGVDNEEL 238
A ++ + ND YG ++KS F NF ++ EP+ + D+ E+
Sbjct: 516 ANKSMLKCNDDYGFTDLQKSE-----DEFGQHNFQVKEEPKNESSDDYEM 560
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 89 ATQTARRINDVYGKDTVKKSTVRFWFQRFRSGNFDLQNEPREQGVDNEEL 238
A ++ + ND YG ++KS F NF ++ EP+ + D+ E+
Sbjct: 516 ANKSMLKCNDDYGFTDLQKSE-----DEFGQHNFQVKEEPKNESSDDYEM 560
>02_04_0108 +
19808539-19808761,19809054-19809697,19809785-19809844,
19809879-19809938,19810079-19810372
Length = 426
Score = 25.8 bits (54), Expect = 6.5
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = -3
Query: 161 KNVPCFFLQYLSHTRHLSFELF 96
+NV + ++Y+SH RH++ +++
Sbjct: 51 RNVATYSVRYVSHLRHITVQIY 72
>01_05_0490 + 22672241-22674679
Length = 812
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 303 LILITVAISCGVCDRSGSMLAVNSSLSTPCSRGS 202
L L+ AI CG+ R+G + + S ST + G+
Sbjct: 99 LFLVAFAILCGLLGRAGDGESSSGSASTAAAAGA 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,283,389
Number of Sequences: 37544
Number of extensions: 155459
Number of successful extensions: 421
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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