Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L05
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    25   4.0  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    25   4.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   5.3  
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    24   7.0  

>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = -3

Query: 318 CYLDDLLRYRNDFLVQGSI*SYLCFNLQTVITVMGIFSYRTN 193
           C++ D+ + +++ +V  S  S+ CF+  T++ +  +    TN
Sbjct: 16  CFIYDIEQLKDNVVVSYSTGSWSCFDKGTLLEIFKVPKAHTN 57


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 273 QGSI*SYLCFNLQTVITVMGIFSYRTNTEQL 181
           +  + S L +N +T++ +    +YRTNT  L
Sbjct: 194 ESQVKSALSWNNETILLIHNAIAYRTNTGML 224


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 184 LLCISSVREDSHYCYYCLQ 240
           LL +S  R+D  YC  C Q
Sbjct: 298 LLALSDFRQDESYCRICTQ 316


>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 204

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 211 DSHYCYYCLQI 243
           D  YCYYC ++
Sbjct: 14  DKEYCYYCFEV 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,809
Number of Sequences: 5004
Number of extensions: 25920
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)