Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L05
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80214-2|CAB02264.2|  338|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    27   6.0  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    26   7.9  

>Z80214-2|CAB02264.2|  338|Caenorhabditis elegans Hypothetical
           protein C27D8.4 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 29  LKCFCIEGHNLLILTS-YNTYCDSP*DVSYYLWLLMFNFVAKHRRVPVVSIHSCSV 193
           + C+ ++ + L +    Y  Y  S  +++ Y+     N VAK RRV  VS+H  +V
Sbjct: 205 MACYSLDSNFLKVYAGPYQAYASSKLNLAVYV-----NEVAKKRRVNTVSLHPGTV 255


>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
 Frame = +2

Query: 206 EKIPITVITVCKLKHKYDYIDPCTRKSFLYR-------RRSSK*QVTVSNYTAASVPNGF 364
           E++ +  + V     KYD+  P T  SFLY        R+  K     S YT   +PNGF
Sbjct: 236 EQVVMMYVLVGSEDEKYDFF-PKTTGSFLYYGEMFVNVRKVEKMDEERSRYTIEVLPNGF 294

Query: 365 N 367
           +
Sbjct: 295 S 295


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 77  YNTYCDSP*DVSYYLWLLMFNFV 145
           YNTY D+    +Y++++ MF+F+
Sbjct: 430 YNTYFDNSSIRAYFIFITMFSFI 452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,236,127
Number of Sequences: 27780
Number of extensions: 148314
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)