Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L04
(438 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 32 0.034
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 1.7
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 2.2
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 26 2.9
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 3.9
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 3.9
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 5.1
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 25 6.7
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 6.7
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 25 6.7
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 32.3 bits (70), Expect = 0.034
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 119 RQKDTWPSNSGECSASDGIYTNYSG 193
+ KDT+P + CS S GI+TN +G
Sbjct: 123 KNKDTFPVSKNNCSLSSGIFTNSNG 147
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 1.7
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +3
Query: 159 QHLMAFTPIIQG---YAHQILKTGVKLQNDNKLQDCLNRIGQAL--QVALANGCVYGNIN 323
QHL FTP+ + ++ + L+ + + + + Q L + C + +
Sbjct: 1065 QHLYLFTPLETNSDFFIRELCGNIIDLKQPKRREISIEVLYQILLQNHEFSESCYKRHFD 1124
Query: 324 NLL-VSLDTLPENRLLRIII 380
L+ SLDT P+N+LL+ I+
Sbjct: 1125 RLIWQSLDTTPDNKLLKNIL 1144
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 150 VNAQHLMAFTPIIQGYAHQILKTGVKLQNDNKLQDC 257
+NAQH + P+ Q Q+ L+ D KL DC
Sbjct: 166 INAQHSLGCIPLNQDSFKQLKLLICILEEDIKLDDC 201
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 234 NDNKLQDCLNRIGQALQVALANGC 305
ND + D LN+IG L +GC
Sbjct: 386 NDGSILDVLNQIGSGLHTLSLSGC 409
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 305 CIWKHKQSPGVTGHTARK 358
CI + KQ+P VTG TAR+
Sbjct: 285 CIRRKKQAPLVTGTTARE 302
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 3.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 321 LCFHIHNHLQEPLARPGLSCSSNP 250
+ + HNHL EPL P + NP
Sbjct: 31 IALYFHNHLDEPLVDP-YDANGNP 53
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 5.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 288 PLARPGLSCSSNPVIYYHFAT*P 220
P AR LS +++PV +Y FAT P
Sbjct: 872 PNARHSLSRANSPVHHYPFATPP 894
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 156 HSPLLEGHVSFCLLGD 109
HSPL+ + +FC LGD
Sbjct: 205 HSPLMRMYDAFCRLGD 220
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/70 (20%), Positives = 30/70 (42%)
Frame = +3
Query: 24 DRSIIKTVKHKALTEAELYIKLHLGVLHSLRAGKRTHGPPTAVNAQHLMAFTPIIQGYAH 203
D S++ + KH +L+ + L + +++ R H + H + F ++ H
Sbjct: 746 DGSLLPSTKHTSLSSSSTSTSLSVRNTTNVKIRLRLHEVSLVLVVAHDITFDELLAKVEH 805
Query: 204 QILKTGVKLQ 233
+I G+ Q
Sbjct: 806 KIKLCGILKQ 815
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 174 FTPIIQGYAHQILKTGVKLQNDNKL 248
FT I Q A+QI +TG KLQ ++L
Sbjct: 43 FTRIAQKIANQINQTGEKLQKLSQL 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,113
Number of Sequences: 5004
Number of extensions: 37119
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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