Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L04
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0884 + 32715963-32716284,32716837-32717567                       29   2.2  
10_01_0136 - 1639780-1639901,1640038-1640093,1641958-1642061,164...    28   2.9  
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592...    28   2.9  
09_06_0178 + 21376146-21376806,21377984-21378101,21378507-21378585     27   5.0  
06_03_0281 - 19109567-19109691,19110479-19110615,19111274-191118...    27   6.6  
04_01_0173 + 1958281-1958802                                           27   8.7  
02_05_0265 + 27267361-27268494                                         27   8.7  

>01_06_0884 + 32715963-32716284,32716837-32717567
          Length = 350

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 150 PLLEGHVSFCLLGDYATLPSV 88
           PL EG    C+L DYAT P+V
Sbjct: 60  PLAEGPAVSCILSDYATHPAV 80


>10_01_0136 -
           1639780-1639901,1640038-1640093,1641958-1642061,
           1642119-1642301,1642963-1643073,1643175-1643330,
           1644627-1644866,1646496-1646603,1646764-1647903
          Length = 739

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 225 KLQNDNKLQDCLNRIGQALQVALANGCVYGNINNLLVSLDTLPENRLLRIII 380
           KL   N LQ C  +    + + L + C++GN   L+V L   P    L +I+
Sbjct: 496 KLTIQNSLQWC-PKFFNLVSLTLGHWCLHGNFYTLIVFLQNSPRLEKLTLIL 546


>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
            14059378-14059539,14059642-14059768,14059869-14060200,
            14060289-14061083,14061379-14061714,14061791-14062730,
            14063338-14063588
          Length = 1633

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +3

Query: 210  LKTGVKLQNDNKLQDCLNRIGQALQVALANGCVYGNINNLLVSLDTLPENRLLR 371
            LKTG++ Q   +++D LN      +V L    + G+ +++  S+D L  NRL R
Sbjct: 957  LKTGIERQII-EMKDLLNMERNEYEVTLLLPVIRGSTHSMKSSIDILELNRLRR 1009


>09_06_0178 + 21376146-21376806,21377984-21378101,21378507-21378585
          Length = 285

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 85  SYTWECCIVSEQAKGHM 135
           SYTW CC VS  A G +
Sbjct: 256 SYTWHCCDVSNGAAGSL 272


>06_03_0281 -
           19109567-19109691,19110479-19110615,19111274-19111828,
           19112784-19112989
          Length = 340

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 141 PTAVNAQHLMAFTPIIQGYAHQILKTGVKLQNDNKLQDCLNRI 269
           PT ++  + M ++   Q Y H+ +    KLQN N L DC+  +
Sbjct: 136 PTMMSIINFMIYSNG-QMYFHKSMNETGKLQNSNFLYDCIREV 177


>04_01_0173 + 1958281-1958802
          Length = 173

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 333 PGDCLCFHIHNHLQEPLARPGLSCSSNP 250
           PG C CFHI N   EP      SC + P
Sbjct: 7   PG-CFCFHIWNAWDEPAVVIVCSCITPP 33


>02_05_0265 + 27267361-27268494
          Length = 377

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 96  GVLHSLRAGKRTHGPPTAVNA 158
           GV+H + AG+R  G P  VNA
Sbjct: 150 GVVHVVAAGRRRGGAPLVVNA 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,651,844
Number of Sequences: 37544
Number of extensions: 235509
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)