Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L04
         (438 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK056149-1|BAB71104.1|  449|Homo sapiens protein ( Homo sapiens ...    42   0.001
BC005121-1|AAH05121.1|  352|Homo sapiens C7orf26 protein protein.      38   0.020
BC001076-1|AAH01076.1|  352|Homo sapiens C7orf26 protein protein.      38   0.020
AK090815-1|BAC03521.1|  320|Homo sapiens protein ( Homo sapiens ...    31   1.7  
Z25884-1|CAA81103.1|  988|Homo sapiens human ClC-1 muscle chlori...    31   2.3  
Z25587-1|CAA80996.1|  988|Homo sapiens human ClC-1 muscle chlori...    31   2.3  
BC113495-1|AAI13496.1|  988|Homo sapiens chloride channel 1, ske...    31   2.3  
BC112156-1|AAI12157.1|  988|Homo sapiens chloride channel 1, ske...    31   2.3  
AY358419-1|AAQ88785.1| 1137|Homo sapiens PLSS3001 protein.             29   5.3  
AK123603-1|BAC85658.1|  143|Homo sapiens protein ( Homo sapiens ...    29   7.0  

>AK056149-1|BAB71104.1|  449|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31587 fis, clone NT2RI2002243. ).
          Length = 449

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
 Frame = +3

Query: 75  LYIKLHLGVLHSLRA------GKRTHGPPTAVNAQHLMAFTPIIQGYAHQILKTGVKLQN 236
           LY KLHL VL  L         K  +G    +   H++     I   A ++      L  
Sbjct: 286 LYSKLHLSVLQVLMTLQLHLTEKNLYGRLGLILFDHMVPLVEEINRLADELNP----LNA 341

Query: 237 DNKLQDCLNRIGQALQVALANGCVYGNINNLLVSLDTLPENRLLRIIIKAHQQ 395
             +++  L+R+ QALQVA+A+G +    ++L      LP N LL+++I    Q
Sbjct: 342 SQEIELSLDRLAQALQVAMASGALLCTRDDLRTLCSRLPHNNLLQLVISGPVQ 394


>BC005121-1|AAH05121.1|  352|Homo sapiens C7orf26 protein protein.
          Length = 352

 Score = 37.5 bits (83), Expect = 0.020
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +3

Query: 228 LQNDNKLQDCLNRIGQALQVALANGCVYGNINNLLVSLDTLPENRLLRIIIKAHQQ 395
           L    +++  L+R+ QALQVA+A+G +    ++L      LP N LL+++I    Q
Sbjct: 242 LNASQEIELSLDRLAQALQVAMASGALLCTRDDLRTLCSRLPHNNLLQLVISGPVQ 297


>BC001076-1|AAH01076.1|  352|Homo sapiens C7orf26 protein protein.
          Length = 352

 Score = 37.5 bits (83), Expect = 0.020
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +3

Query: 228 LQNDNKLQDCLNRIGQALQVALANGCVYGNINNLLVSLDTLPENRLLRIIIKAHQQ 395
           L    +++  L+R+ QALQVA+A+G +    ++L      LP N LL+++I    Q
Sbjct: 242 LNASQEIELSLDRLAQALQVAMASGALLCTRDDLRTLCSRLPHNNLLQLVISGPVQ 297


>AK090815-1|BAC03521.1|  320|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33496 fis, clone BRAMY2003929. ).
          Length = 320

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 278 LASGSCKWLCIWKHKQSPGVTGHTA 352
           LASG   W  +W+H+Q PGV+G TA
Sbjct: 208 LASGLVIWQPMWEHRQ-PGVSGFTA 231


>Z25884-1|CAA81103.1|  988|Homo sapiens human ClC-1 muscle chloride
           channel protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
 Frame = +3

Query: 96  GVLHSLR--AGKRTHGPPTAVNAQHLMAFTPIIQGYAHQILKTGVKLQNDNK-------L 248
           G+ H LR  AG R +  PT +   H   F+   Q       KTG     D+K        
Sbjct: 41  GLQHRLRKDAGPRHNVHPTQIYGHHKEQFSDREQDIGMP-KKTGSSSTVDSKDEDHYSKC 99

Query: 249 QDCLNRIGQALQVALANGCVYGNINNLLVSL 341
           QDC++R+GQ ++  L    ++  +  LL++L
Sbjct: 100 QDCIHRLGQVVRRKLGEDWIFLVLLGLLMAL 130


>Z25587-1|CAA80996.1|  988|Homo sapiens human ClC-1 muscle chloride
           channel protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
 Frame = +3

Query: 96  GVLHSLR--AGKRTHGPPTAVNAQHLMAFTPIIQGYAHQILKTGVKLQNDNK-------L 248
           G+ H LR  AG R +  PT +   H   F+   Q       KTG     D+K        
Sbjct: 41  GLQHRLRKDAGPRHNVHPTQIYGHHKEQFSDREQDIGMP-KKTGSSSTVDSKDEDHYSKC 99

Query: 249 QDCLNRIGQALQVALANGCVYGNINNLLVSL 341
           QDC++R+GQ ++  L    ++  +  LL++L
Sbjct: 100 QDCIHRLGQVVRRKLGEDWIFLVLLGLLMAL 130


>BC113495-1|AAI13496.1|  988|Homo sapiens chloride channel 1,
           skeletal muscle (Thomsen disease, autosomal dominant)
           protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
 Frame = +3

Query: 96  GVLHSLR--AGKRTHGPPTAVNAQHLMAFTPIIQGYAHQILKTGVKLQNDNK-------L 248
           G+ H LR  AG R +  PT +   H   F+   Q       KTG     D+K        
Sbjct: 41  GLQHRLRKDAGPRHNVHPTQIYGHHKEQFSDREQDIGMP-KKTGSSSTVDSKDEDHYSKC 99

Query: 249 QDCLNRIGQALQVALANGCVYGNINNLLVSL 341
           QDC++R+GQ ++  L    ++  +  LL++L
Sbjct: 100 QDCIHRLGQVVRRKLGEDWIFLVLLGLLMAL 130


>BC112156-1|AAI12157.1|  988|Homo sapiens chloride channel 1,
           skeletal muscle (Thomsen disease, autosomal dominant)
           protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
 Frame = +3

Query: 96  GVLHSLR--AGKRTHGPPTAVNAQHLMAFTPIIQGYAHQILKTGVKLQNDNK-------L 248
           G+ H LR  AG R +  PT +   H   F+   Q       KTG     D+K        
Sbjct: 41  GLQHRLRKDAGPRHNVHPTQIYGHHKEQFSDREQDIGMP-KKTGSSSTVDSKDEDHYSKC 99

Query: 249 QDCLNRIGQALQVALANGCVYGNINNLLVSL 341
           QDC++R+GQ ++  L    ++  +  LL++L
Sbjct: 100 QDCIHRLGQVVRRKLGEDWIFLVLLGLLMAL 130


>AY358419-1|AAQ88785.1| 1137|Homo sapiens PLSS3001 protein.
          Length = 1137

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 254 LLEQDRPGLASGSCKW---LCIWKHKQSPGVTGHT 349
           LL QD P    GSC +   LC W H   PG+ G++
Sbjct: 881 LLLQDGPCPQPGSCDFESGLCGWSHLAGPGLGGYS 915


>AK123603-1|BAC85658.1|  143|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41609 fis, clone CTONG3001560. ).
          Length = 143

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 200 CISLNNWCKCHQMLSIHRCWRAMCPFACSETMQHSQV*LYIKLCL 66
           C+ L  +C C  + S H C R MC   C   +  + V L + +CL
Sbjct: 5   CVYLRLFCVCVHVCSYHVCMR-MCVTVCVRALVRAHVCL-VTVCL 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,775,443
Number of Sequences: 237096
Number of extensions: 1398597
Number of successful extensions: 6697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6697
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)