Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L04
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical pr...    31   0.48 
U97000-4|AAC47994.1|  395|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z77737-1|CAB01296.1|  105|Caenorhabditis elegans PP1-like Ser/Th...    28   2.6  
Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical p...    28   2.6  
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    28   3.4  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z71266-6|CAA95844.1|  184|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z66498-5|CAA91294.2|  513|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z54327-14|CAA91124.2|  513|Caenorhabditis elegans Hypothetical p...    27   7.9  
U97000-3|AAC47996.1|  389|Caenorhabditis elegans Aspartyl protea...    27   7.9  

>U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical
           protein C48B6.8 protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 204 QILKTGVKLQNDNKLQDCLNRIGQALQVALANGCVYGNINNLLVSLDTL 350
           +I +   K + D+K  DC  +  +A++    N C  GN+ N L SLD L
Sbjct: 591 EIQELQTKKKEDSKKIDCRTKEVRAIEALSLNSCKTGNMGN-LPSLDAL 638


>U97000-4|AAC47994.1|  395|Caenorhabditis elegans Hypothetical
           protein F21F8.4 protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +3

Query: 33  IIKTVKHKALTEAELYIKL-HLGVLHSLRAGKRTHGPPTAVNAQHLMAFTPIIQGYAHQI 209
           +I  +  K L +    + L H G   ++  G  T+G     N   ++A+ P+     +Q 
Sbjct: 199 LINAINKKILDQPLFTVFLEHKGTAKNVGGGVFTYGAVDTTNCGPVIAYQPLSSATYYQF 258

Query: 210 LKTGVKL--QNDNKLQDCLNRIGQAL 281
           +  G KL   ++NK    ++  G +L
Sbjct: 259 VADGFKLGSYSNNKKSQVISDTGSSL 284


>Z77737-1|CAB01296.1|  105|Caenorhabditis elegans PP1-like Ser/Thr
           protein phosphataseprotein.
          Length = 105

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 195 YAHQILKTGVKLQNDNKLQDCLNRIGQALQVALANGCVYGNINNLLVSLDTL 350
           Y    +K GV +  D   Q C NR+  A  ++    C++G ++  LV+LDT+
Sbjct: 40  YVECQVKYGVGIWWD--FQSCFNRMPMAGLISKKVLCMHGGLSPELVNLDTI 89


>Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical
           protein F58A4.14 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +3

Query: 93  LGVLHSLRAGKRTHGPPTAVNAQHLMAFTPIIQGYAHQILKTGVKLQNDNKLQDCLNRIG 272
           LG+++ LR G+   G    V   + +A+ P     +  IL  G  +QN +     LN+  
Sbjct: 239 LGLIY-LRTGQVQEG---FVQLGNCLAYDP---ANSQAILTIGSIMQNHSDHDVALNKYR 291

Query: 273 QALQVALANGCVYGNI 320
            A  V+  NGC++ NI
Sbjct: 292 VAADVSDYNGCLWNNI 307


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 137 PSNSGECSAS-DGIYTNYSGIC 199
           P N+G+C+++ DGI TNY+  C
Sbjct: 382 PCNNGKCASTIDGITTNYTCTC 403


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = -3

Query: 319 MFPYTQPFARATCKAWPILFKQSCNLLSFCNLTPVLSI*CAYP*IIGVNAIRC-*AFTAV 143
           +F Y  PF  + C+    L    C LLS    T + +  C    +      RC    TA+
Sbjct: 226 VFGYCVPFTNSKCQQTQTLVNNQCVLLSIVGETCIANQQCVGGAMCNSGTCRCTNGATAM 285

Query: 142 GGPCV 128
            G C+
Sbjct: 286 YGYCI 290


>Z71266-6|CAA95844.1|  184|Caenorhabditis elegans Hypothetical
           protein R06C7.6 protein.
          Length = 184

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 278 LASGSCKWLCIWKHKQSPGVTGH 346
           + S  CK + +WK K +  + GH
Sbjct: 35  IISNDCKMIPLWKQKAAKSINGH 57


>Z66498-5|CAA91294.2|  513|Caenorhabditis elegans Hypothetical
           protein C26D10.6a protein.
          Length = 513

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +3

Query: 165 LMAFTPIIQGYAHQILKTGVKLQNDNKLQDCLNRIGQALQVALANGCVYGNINNLLVSLD 344
           L  F    QG   ++  TGV L+N N+L    N IG      L N CV+ + +  L+++D
Sbjct: 10  LQLFVGFSQGSRCRLPWTGVWLENGNELNITHNSIGN-----LGN-CVHKSRDLYLLTID 63

Query: 345 T 347
           T
Sbjct: 64  T 64


>Z54327-14|CAA91124.2|  513|Caenorhabditis elegans Hypothetical
           protein C26D10.6a protein.
          Length = 513

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +3

Query: 165 LMAFTPIIQGYAHQILKTGVKLQNDNKLQDCLNRIGQALQVALANGCVYGNINNLLVSLD 344
           L  F    QG   ++  TGV L+N N+L    N IG      L N CV+ + +  L+++D
Sbjct: 10  LQLFVGFSQGSRCRLPWTGVWLENGNELNITHNSIGN-----LGN-CVHKSRDLYLLTID 63

Query: 345 T 347
           T
Sbjct: 64  T 64


>U97000-3|AAC47996.1|  389|Caenorhabditis elegans Aspartyl protease
           protein 6 protein.
          Length = 389

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +3

Query: 90  HLGVLHSLRAGKRTHGPPTAVNAQHLMAFTPIIQGYAHQILKTGVKL--QNDNKLQDCLN 263
           H G  +++  G  T+G     N   L+A+ P+     +Q    G KL   ++ K  D ++
Sbjct: 217 HRGAANNVGGGVFTYGAIDTTNCGALVAYQPLSSATYYQFKAAGFKLGSYSNTKTVDVIS 276

Query: 264 RIG 272
             G
Sbjct: 277 DTG 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,212,415
Number of Sequences: 27780
Number of extensions: 214240
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)