Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L03
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AL031630-19|CAA20999.1|  123|Caenorhabditis elegans Hypothetical...    27   3.7  
Z78015-7|CAB01438.1|  381|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z77657-10|CAB01152.1|  381|Caenorhabditis elegans Hypothetical p...    27   4.9  

>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
           protein R10E8.6 protein.
          Length = 1696

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 133 THNDTSPATDTIENRYYNRTMNSSKTVANSH*TNITINFDYL 8
           T+ D + A   +EN  Y         V +   T++T+N D++
Sbjct: 398 TYTDKNTAEKKVENFEYKSLETGCSAVVSERRTSLTVNLDHM 439


>AL031630-19|CAA20999.1|  123|Caenorhabditis elegans Hypothetical
           protein Y38H6C.22 protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 47  ICNCFTRVHCSIVISILDCIC 109
           ICNCF  +  ++VIS  D IC
Sbjct: 2   ICNCFLLIIVTLVISNCDGIC 22


>Z78015-7|CAB01438.1|  381|Caenorhabditis elegans Hypothetical
           protein F08H9.9 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 166 PGSDWTLLHTNTHNDTSPATDTIENRYYNRTMNSSKTVANSH*TNITINFDYLLV 2
           P   +  LHT T N TSP       +YYN  ++   ++ + + T IT+  D  LV
Sbjct: 157 PNKKYGGLHTRTGNITSPGYPV---QYYN-NLDCFYSITSPNNTYITLQLDPYLV 207


>Z77657-10|CAB01152.1|  381|Caenorhabditis elegans Hypothetical
           protein F08H9.9 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 166 PGSDWTLLHTNTHNDTSPATDTIENRYYNRTMNSSKTVANSH*TNITINFDYLLV 2
           P   +  LHT T N TSP       +YYN  ++   ++ + + T IT+  D  LV
Sbjct: 157 PNKKYGGLHTRTGNITSPGYPV---QYYN-NLDCFYSITSPNNTYITLQLDPYLV 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,958,774
Number of Sequences: 27780
Number of extensions: 123711
Number of successful extensions: 287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)