Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L03
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   3.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   7.3  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    20   7.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   7.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.6  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 194 CTRQKHRNRTRLRLDFTT 141
           CT +KH+   + R  FTT
Sbjct: 1   CTLRKHKPNRKPRTPFTT 18


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 192 TNSSRAAAVAPRTYLFRI*LTIKFYN 269
           TN+ R A+V   TY     L++  +N
Sbjct: 527 TNARRVASVRAETYCNLFSLSVDHFN 552


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 264 YNQTYVILYFFIIN 305
           YN  Y  LY+ IIN
Sbjct: 327 YNNNYKPLYYNIIN 340


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 192 TNSSRAAAVAPRTYLFRI*LTIKFYN 269
           TN+ R A+V   TY     L++  +N
Sbjct: 495 TNARRVASVRAETYCNLFSLSVDHFN 520


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 156 TGLYYILIHIMTLHPPQIQSRIDI 85
           T +YYI+I    L    +  RID+
Sbjct: 111 TNIYYIIILAWALFYLLVSLRIDL 134


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 156 TGLYYILIHIMTLHPPQIQSRIDI 85
           T +YYI+I    L    +  RID+
Sbjct: 164 TNIYYIIILAWALFYLLVSLRIDL 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,249
Number of Sequences: 438
Number of extensions: 1907
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)