Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L02
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   2.3  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   2.3  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    24   5.4  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    24   5.4  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   7.1  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    23   9.4  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 172 RCIWRKQTQCEIRAWRTERSC*NFRRSS 255
           RCIWRK  +C   A+ +ER+   FR  S
Sbjct: 163 RCIWRKGKKCH-SAYISERTKPIFRSES 189


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 119 ANEDEGKLELFSGVVIEKDASGENK 193
           +  D+G L+LF    +EK+  G+N+
Sbjct: 55  SENDDGTLDLFGDSELEKEQKGDNQ 79


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 319 HHGNHLNTNASQEW 278
           HHGN  N+ ++Q W
Sbjct: 622 HHGNTYNSGSAQSW 635


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 63  RIFSKFTLKLSGLYSYEGPSC 1
           R +SK  + + GLYS EG  C
Sbjct: 324 RPYSKILVVIEGLYSMEGNFC 344


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 60   CVYCVWYYA 86
            C +C WYYA
Sbjct: 1166 CTFCCWYYA 1174


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 119 ANEDEGKL--ELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKI 265
           A ++E K    L   V +E  A  E++ +      E  EA R+FE+++GK+
Sbjct: 207 AKQEEKKRAKRLNDAVPLEDMAGSESRPSYDSIFRESFEAKRSFEDSKGKV 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,220,976
Number of Sequences: 5004
Number of extensions: 19653
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)