Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L02
(336 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068500-1|AAH68500.1| 658|Homo sapiens large subunit GTPase 1 ... 29 2.7
BC040119-1|AAH40119.1| 649|Homo sapiens LSG1 protein protein. 29 2.7
BC015042-1|AAH15042.1| 648|Homo sapiens Unknown (protein for IM... 29 2.7
AK002163-1|BAA92116.1| 642|Homo sapiens protein ( Homo sapiens ... 29 2.7
BX538130-1|CAD98031.1| 986|Homo sapiens hypothetical protein pr... 28 8.2
BC060862-1|AAH60862.1| 985|Homo sapiens ring finger protein 111... 28 8.2
BC020984-1|AAH20984.1| 441|Homo sapiens RNF111 protein protein. 28 8.2
AK131488-1|BAD18633.1| 602|Homo sapiens protein ( Homo sapiens ... 28 8.2
AK131304-1|BAD18471.1| 994|Homo sapiens protein ( Homo sapiens ... 28 8.2
AK095327-1|BAC04531.1| 370|Homo sapiens protein ( Homo sapiens ... 28 8.2
>BC068500-1|AAH68500.1| 658|Homo sapiens large subunit GTPase 1
homolog (S. cerevisiae) protein.
Length = 658
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 191 KLNVKFEPGELREAARTFEEARGKIKK 271
KLN+KF P E R +FEE++ +IKK
Sbjct: 77 KLNIKFVPAEARTGLLSFEESQ-RIKK 102
>BC040119-1|AAH40119.1| 649|Homo sapiens LSG1 protein protein.
Length = 649
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 191 KLNVKFEPGELREAARTFEEARGKIKK 271
KLN+KF P E R +FEE++ +IKK
Sbjct: 77 KLNIKFVPAEARTGLLSFEESQ-RIKK 102
>BC015042-1|AAH15042.1| 648|Homo sapiens Unknown (protein for
IMAGE:3920630) protein.
Length = 648
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 191 KLNVKFEPGELREAARTFEEARGKIKK 271
KLN+KF P E R +FEE++ +IKK
Sbjct: 77 KLNIKFVPAEARTGLLSFEESQ-RIKK 102
>AK002163-1|BAA92116.1| 642|Homo sapiens protein ( Homo sapiens
cDNA FLJ11301 fis, clone PLACE1009908, weakly similar to
HYPOTHETICAL GTP-BINDING PROTEIN IN SEH1-PRP20
INTERGENIC ).
Length = 642
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 191 KLNVKFEPGELREAARTFEEARGKIKK 271
KLN+KF P E R +FEE++ +IKK
Sbjct: 77 KLNIKFVPAEARTGLLSFEESQ-RIKK 102
>BX538130-1|CAD98031.1| 986|Homo sapiens hypothetical protein
protein.
Length = 986
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 158 HQRIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNL 45
HQ A H + PP QP +IP+ +HAF +
Sbjct: 659 HQASACPHSHGNPPPQTQPPPQVDYVIPHPVHAFHSQI 696
>BC060862-1|AAH60862.1| 985|Homo sapiens ring finger protein 111
protein.
Length = 985
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 158 HQRIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNL 45
HQ A H + PP QP +IP+ +HAF +
Sbjct: 658 HQASACPHSHGNPPPQTQPPPQVDYVIPHPVHAFHSQI 695
>BC020984-1|AAH20984.1| 441|Homo sapiens RNF111 protein protein.
Length = 441
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 158 HQRIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNL 45
HQ A H + PP QP +IP+ +HAF +
Sbjct: 106 HQASACPHSHGNPPPQTQPPPQVDYVIPHPVHAFHSQI 143
>AK131488-1|BAD18633.1| 602|Homo sapiens protein ( Homo sapiens
cDNA FLJ16671 fis, clone THYMU3001428. ).
Length = 602
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 158 HQRIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNL 45
HQ A H + PP QP +IP+ +HAF +
Sbjct: 258 HQASACPHSHGNPPPQTQPPPQVDYVIPHPVHAFHSQI 295
>AK131304-1|BAD18471.1| 994|Homo sapiens protein ( Homo sapiens
cDNA FLJ16278 fis, clone NT2RI3001132, highly similar
to Mus musculus Arkadia (Arkadia) mRNA. ).
Length = 994
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 158 HQRIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNL 45
HQ A H + PP QP +IP+ +HAF +
Sbjct: 659 HQASACPHSHGNPPPQTQPPPQVDYVIPHPVHAFHSQI 696
>AK095327-1|BAC04531.1| 370|Homo sapiens protein ( Homo sapiens
cDNA FLJ38008 fis, clone CTONG2012452, highly similar to
Mus musculus Arkadia (Arkadia) mRNA. ).
Length = 370
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 158 HQRIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNL 45
HQ A H + PP QP +IP+ +HAF +
Sbjct: 35 HQASACPHSHGNPPPQTQPPPQVDYVIPHPVHAFHSQI 72
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,580,480
Number of Sequences: 237096
Number of extensions: 819791
Number of successful extensions: 1566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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