Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L02
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    31   0.27 
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    29   1.1  
U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    26   7.7  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    26   7.7  
U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -2

Query: 158 HQRIAPVSLHLHS-PPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTKAP 6
           ++ + P S H  + PP VQ    PPC    T    +     + P C  T AP
Sbjct: 186 YRTVPPASNHYETVPPAVQTTPQPPCTPRTTTTTTTTTTTTTLPPCVYTPAP 237


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = -2

Query: 158 HQRIAPVSLHLHS-PPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTKAP 6
           ++ I PV  H  + PP  Q    PPC    T    +     + P C  T AP
Sbjct: 263 YRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTTTTTTTTTALPPCVYTPAP 314


>U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical
           protein T18H9.7a protein.
          Length = 803

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 70  QYTHFLKIYSEVIRIVLLRR 11
           QY HFLK  S V++I++ RR
Sbjct: 91  QYPHFLKRKSNVLQILIQRR 110


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 173 LSQ*QHQRIAPVSLHLHSPP 114
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 173 LSQ*QHQRIAPVSLHLHSPP 114
           + Q QHQ   P  +H+H+PP
Sbjct: 346 MHQHQHQIAPPQRIHIHNPP 365


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 173 LSQ*QHQRIAPVSLHLHSPP 114
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical
           protein F55C12.5a protein.
          Length = 876

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 109 CSPASYHHA*YQTQYTHFLKIYSEVIRIVLLRRP 8
           C P  Y +  Y++ Y  F+K  + ++ I +  RP
Sbjct: 532 CLPKEYEYLKYRSNYASFVKQIATILSIQVPPRP 565


>U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical
           protein F55C12.5b protein.
          Length = 925

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 109 CSPASYHHA*YQTQYTHFLKIYSEVIRIVLLRRP 8
           C P  Y +  Y++ Y  F+K  + ++ I +  RP
Sbjct: 581 CLPKEYEYLKYRSNYASFVKQIATILSIQVPPRP 614


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 107 QPCKLPPCIIPNT 69
           +PCK PPCII  T
Sbjct: 256 KPCKNPPCIIKTT 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,755,574
Number of Sequences: 27780
Number of extensions: 113870
Number of successful extensions: 257
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)