Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L01
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    85   3e-18
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   3.0  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   3.9  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   3.9  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    24   6.9  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    24   9.1  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    24   9.1  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   9.1  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    24   9.1  

>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 43/86 (50%), Positives = 62/86 (72%), Gaps = 3/86 (3%)
 Frame = +2

Query: 128 EFCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGL-DITDEQIAELES 304
           ++ +Y +PL+ RYAS EM + FS + + +TWR+LW+ LA AEK+LGL  ITDE I +L++
Sbjct: 3   DYGSYSTPLTARYASAEMSHLFSREMRINTWRQLWLNLAIAEKQLGLTQITDEAIEQLKA 62

Query: 305 --AIHDIDFDKASEHEKRVRHDVMAH 376
              I   +F+ A++ EKR RHDVMAH
Sbjct: 63  HVKITAPEFEIAAKEEKRQRHDVMAH 88


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 188 YIAFLWMHI*CSTVNDNYRILNFEFQSEHL 99
           + A  W    C  +N NY+   FEF  + L
Sbjct: 69  FYAVSWQRAICGPLNSNYKQSEFEFYIDDL 98


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 14  RKVMRNTVTCQ--SFTICDVFE*LSNKMFTIDAPIEIQNSEFCNYRSPLST 160
           + ++   V C+  S ++ DVFE  S+          + +SEFC+  + L T
Sbjct: 481 KAILCTLVVCEKTSLSVADVFEKYSSLCLRDRLIYPLTSSEFCDVANSLET 531


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 183 NIILVIRRNFQLGVNYGFIL 242
           NI+ +   ++ + VNYGFIL
Sbjct: 97  NIVTICSNSYSILVNYGFIL 116


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 230 WIYLAKAEKELGLDITDEQIAELESAIHDIDF 325
           WI L K  +   LDI+D +  +L   + D +F
Sbjct: 344 WIALEKYFEVNALDISDSESEDLSDILSDSEF 375


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/58 (20%), Positives = 24/58 (41%)
 Frame = +2

Query: 98  IDAPIEIQNSEFCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGLD 271
           +D  + + N+    +    S       +   FS++  FS WR L+++        G+D
Sbjct: 255 VDEDLNLINAYLSQFGKKRSLNELCALLSRRFSNRHTFSEWRALFMHFFPFINSEGVD 312


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 233  IYLAKAEKELGLDITDEQIAELESAIHDIDFDKASEHEKRVRHD 364
            + LA AE E   D+   Q+A  ESA+   +F + S  +  +  D
Sbjct: 1185 VALAAAEDEE--DVQAAQVARKESALEQTEFSETSTPQAMLTKD 1226


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  VTCQSFTICDVFE*LSNKMFTIDAPIEIQ 121
           +    F I D+ E L + MFTI A  EIQ
Sbjct: 471 IVSMQFQINDLNEQLRDLMFTISASQEIQ 499


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 366 TSCLTRFSCSDALSKSMSWIADSNSAICSSVM 271
           T C  + SC  ALS  + ++   N  + S+++
Sbjct: 507 TDCPMQLSCLAALSLGLIFVGTCNGDVASTIL 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,503,267
Number of Sequences: 5004
Number of extensions: 27271
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)