Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L01
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0012 - 4914223-4914468,4914511-4914587,4914671-4914732,491...    28   2.1  
03_02_0991 - 13034540-13034830,13035057-13035202,13035203-130353...    27   3.7  
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474...    27   4.9  
02_04_0081 + 19541691-19541798,19541865-19542062,19542133-195421...    27   6.5  
01_01_0062 + 497728-497922,499444-499481,499576-499598,501156-50...    27   6.5  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    26   8.6  

>03_02_0012 -
           4914223-4914468,4914511-4914587,4914671-4914732,
           4914825-4915018,4915153-4915439,4915520-4915646,
           4916216-4916446,4917210-4917384,4917461-4917668,
           4917745-4917793,4918016-4918300
          Length = 646

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 366 TSCLTRFSCSDALSKSMSWIADSNSAICSSVMSRPN 259
           TS L   + S    K M W+ D   A CS V+   N
Sbjct: 505 TSFLCFVNSSSIKEKIMGWVTDEREAFCSVVLDMSN 540


>03_02_0991 -
           13034540-13034830,13035057-13035202,13035203-13035305,
           13037980-13038115,13038221-13038439,13038574-13038949,
           13040854-13041027,13041065-13041101
          Length = 493

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 254 KELGLD-ITDEQIAELESAIHDIDFDKASEHEKRVR 358
           + LG+D + +E+IA   + IH  +FD  S H+  +R
Sbjct: 22  QRLGIDHLFEEEIATTLNTIHGAEFDSPSLHDVALR 57


>06_03_0541 -
           21944696-21944851,21944939-21945142,21945438-21947472,
           21947644-21947720,21948289-21948477,21949188-21949448,
           21949527-21949632,21951330-21951517,21951814-21951971,
           21952015-21952840,21952947-21953210
          Length = 1487

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 194 SDQKKFSTWRKLWIYLAKAEKELGLDI 274
           +D  KF+ W+ +W Y    E EL L +
Sbjct: 452 NDDDKFNDWQAVWAYAIGPEPELVLSL 478


>02_04_0081 +
           19541691-19541798,19541865-19542062,19542133-19542191,
           19542274-19542994,19543382-19543723
          Length = 475

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 200 QKKFSTWRKLWIYLAKAEKELGLDITDEQIAELESAIHDIDFDKASE 340
           ++ F+ W  L   LA  ++ +    T  ++AELE  I ++  D+A E
Sbjct: 361 EEVFACWADLESVLADRDRRIQYWRTKFEVAELERTILEVKRDRAVE 407


>01_01_0062 +
           497728-497922,499444-499481,499576-499598,501156-501262,
           501356-501407,501475-501559,501910-502000,502251-502289,
           502383-502455,503285-503344,503439-503512,503606-503698,
           503779-503880,504048-504128,504352-504426,504486-504614,
           504705-504809
          Length = 473

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +2

Query: 254 KELGLDITDEQIAELESAIHDI---DFDKASEHE 346
           +ELG+D  D Q  +L   +HDI    F    EHE
Sbjct: 123 EELGIDRVDMQTVKLAGLLHDIGHGPFSHLFEHE 156


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +2

Query: 125  SEFCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGLDITDEQIAELES 304
            S FC   + LST+   K++    SD +K++       YL K  ++L L   D +I +L  
Sbjct: 2289 SSFCKEVTVLSTKTRPKKLVLQGSDGQKYT-------YLLKGREDLRL---DSRIMQLLE 2338

Query: 305  AIHDIDFDKASEHEKRV 355
            AI+   +  +    + +
Sbjct: 2339 AINSFFYSSSDTRSRNM 2355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,119,753
Number of Sequences: 37544
Number of extensions: 150793
Number of successful extensions: 374
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)