Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L01
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical pr...    66   8e-12
Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical pr...    66   8e-12
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    29   0.83 
AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical ...    29   1.5  

>Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical
           protein R06C7.5b protein.
          Length = 370

 Score = 66.1 bits (154), Expect = 8e-12
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
 Frame = +2

Query: 140 YRSPLSTRYASKEMQYNF-SDQKKFSTWRKLWIYLAKAEKELGL-DITDEQIAELESAIH 313
           + S LSTRY       +  S+  K + WR+LWI+LA+AEKELGL  +T + I E++S   
Sbjct: 7   FESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRD 66

Query: 314 DIDFDKASEHEKRVRHDVMAH 376
             D+      E++++HDVMAH
Sbjct: 67  VFDWPFIRSEERKLKHDVMAH 87


>Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical
           protein R06C7.5a protein.
          Length = 478

 Score = 66.1 bits (154), Expect = 8e-12
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
 Frame = +2

Query: 140 YRSPLSTRYASKEMQYNF-SDQKKFSTWRKLWIYLAKAEKELGL-DITDEQIAELESAIH 313
           + S LSTRY       +  S+  K + WR+LWI+LA+AEKELGL  +T + I E++S   
Sbjct: 7   FESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRD 66

Query: 314 DIDFDKASEHEKRVRHDVMAH 376
             D+      E++++HDVMAH
Sbjct: 67  VFDWPFIRSEERKLKHDVMAH 87


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 23  MRNTVTCQSFTICDVFE*LSNKMFTIDAPIEIQNSE 130
           MRN    QSFT+CD+        FT+ AP+   +SE
Sbjct: 236 MRNIRLLQSFTLCDLI--FVFTCFTLSAPVHYYSSE 269


>AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical
           protein W10G11.17 protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 179 MQYNFS--DQKKFSTWRKLWIYLAKAEKELGLDITDEQIAELESAIHDIDFDKASE 340
           M YN S  D ++ +TW+K W   A+ EK    +++     + E  + +ID  K +E
Sbjct: 1   MDYNLSTDDFEECATWQKYWNLTAELEKNKDRNLSSSG-NDTEDVVSEIDELKETE 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,225,829
Number of Sequences: 27780
Number of extensions: 149338
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)