Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K22
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.6  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   4.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 421 LMITPHS*DIFNQKTSTVRDSSPRYVK 341
           L++  +S D F++ TS   D  PRY K
Sbjct: 216 LIMYQNSDDSFHRLTSNTFDYDPRYTK 242


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 421 LMITPHS*DIFNQKTSTVRDSSPRYVK 341
           L++  ++ D F++ TS   D  PRY K
Sbjct: 211 LIVYQNADDSFHRLTSNTFDYDPRYAK 237


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +1

Query: 151 VVSVSNNSCLSINPISFRWM 210
           ++ + NN C S+N  +  W+
Sbjct: 21  IIGLHNNMCTSLNLSNLFWL 40


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 341 LNISGRAISNSGRLLVEY 394
           LN+    I N GRLL  Y
Sbjct: 94  LNVISEKIGNGGRLLQPY 111


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 154 VSVSNNSCLSINPISFR 204
           +++S N+  SI+P++FR
Sbjct: 412 LTLSGNAIASIDPLAFR 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,018
Number of Sequences: 438
Number of extensions: 2459
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)