Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K20
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 139 2e-34
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 139 2e-34
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 139 2e-34
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 81 9e-17
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 27 1.5
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 27 2.0
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 26 3.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 4.6
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 6.1
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 6.1
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 8.1
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 25 8.1
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 139 bits (337), Expect = 2e-34
Identities = 66/69 (95%), Positives = 69/69 (100%)
Frame = +2
Query: 89 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 268
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 269 LLIRKLPFQ 295
LLIRKLPFQ
Sbjct: 61 LLIRKLPFQ 69
Score = 99.5 bits (237), Expect = 2e-22
Identities = 47/53 (88%), Positives = 49/53 (92%)
Frame = +1
Query: 328 DFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 486
DFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR
Sbjct: 78 DFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARR 130
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 139 bits (337), Expect = 2e-34
Identities = 66/69 (95%), Positives = 69/69 (100%)
Frame = +2
Query: 89 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 268
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 269 LLIRKLPFQ 295
LLIRKLPFQ
Sbjct: 61 LLIRKLPFQ 69
Score = 99.5 bits (237), Expect = 2e-22
Identities = 47/53 (88%), Positives = 49/53 (92%)
Frame = +1
Query: 328 DFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 486
DFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR
Sbjct: 78 DFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARR 130
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 139 bits (337), Expect = 2e-34
Identities = 66/69 (95%), Positives = 69/69 (100%)
Frame = +2
Query: 89 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 268
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 269 LLIRKLPFQ 295
LLIRKLPFQ
Sbjct: 61 LLIRKLPFQ 69
Score = 99.5 bits (237), Expect = 2e-22
Identities = 47/53 (88%), Positives = 49/53 (92%)
Frame = +1
Query: 328 DFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 486
DFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR
Sbjct: 78 DFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARR 130
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 81.0 bits (191), Expect = 9e-17
Identities = 41/57 (71%), Positives = 48/57 (84%), Gaps = 2/57 (3%)
Frame = +1
Query: 322 VNDFKTD--LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 486
V +F TD LR+QS A+ LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QLARR
Sbjct: 60 VANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARR 116
Score = 53.2 bits (122), Expect = 2e-08
Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Frame = +2
Query: 164 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPF 292
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPF 48
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 1.5
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = -3
Query: 432 GAKVGVFKQTHQIGFTGLLQSANGSRLETKIGFKVVDANFPRTEVSWKGSLRINNS 265
G VG+F+ +H + ++++ G +E + + P+T + W + +NS
Sbjct: 642 GQPVGLFRASHPVVAKRVVKNDEGEPIEIIAEYDASSSKKPKTFIQWVSRDKESNS 697
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 26.6 bits (56), Expect = 2.0
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -3
Query: 480 GELDVFRHNGYAFGMDGAKVGVFKQTHQIGFTGLLQSANGSRLETKIGFKVVDANFPRTE 301
GE + Y G GA ++ + + TGLL+ + L +GF +A+FP
Sbjct: 607 GESEALSFTNYTPGFKGAIDHIWYTGNSLEVTGLLKGVDKDYLSGVVGFP--NAHFPSDH 664
Query: 300 V 298
+
Sbjct: 665 I 665
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 3.5
Identities = 16/75 (21%), Positives = 30/75 (40%)
Frame = +2
Query: 131 KAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQLTSVR 310
KAP + T G+K + G + + QK E RK+ ++ ++
Sbjct: 33 KAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHAFRKVKLRVEDIQ 92
Query: 311 GKFASTTLKPIFVSS 355
GK T+ + ++S
Sbjct: 93 GKSCLTSFNGLSITS 107
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 344 FVSSLLPLALCKRPVKPIWWVCLKTPTFAPS 436
F S+ PL + + I WVC+ T FA S
Sbjct: 671 FTSNFAPLKFDNQALSVIIWVCVFTCKFAES 701
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 458 IMVTRLAWMAQRLVSSNRPTR 396
I T W A RLV+ N PTR
Sbjct: 412 ITETNSNWFAHRLVAENDPTR 432
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.0 bits (52), Expect = 6.1
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 119 STGGKAPRKQLA--TKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 292
+T K +K L TK ARK+ T + + + + ++ +YQ +I F
Sbjct: 439 TTNFKKRKKDLPYLTKKARKNYKETKKITQEMKEADAVITAQDKEKYQSEILKIIFITYF 498
Query: 293 QLTSVRGKFASTTLKPI 343
+ ++GK L+ +
Sbjct: 499 KTLQLKGKLIGNALEGV 515
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 8.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 176 APSTGGVKKPHRYRPGTVALREIRRY 253
APS G K P P T+ + EIRR+
Sbjct: 25 APSGLGWKSPSLAEPFTLPISEIRRF 50
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 8.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 359 ADWKRRSVLKSLTQIFLEPKSAGKAACGSTTP*IF 255
AD++R +LK + EPK+ KA GST P F
Sbjct: 31 ADFRRICILKGVYP--REPKNKKKANKGSTAPVTF 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,132
Number of Sequences: 5004
Number of extensions: 41720
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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