Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K20
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.76 
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.3  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 378 LQSANGSRLETKIGFKVVDANFPRTEV 298
           L  ANG  ++T   + V++ NFP   +
Sbjct: 10  LALANGEEIKTIYSWNVIEYNFPNDNI 36


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 354 LETKIGFKVVDANFPRTEVSW 292
           L  KI F  +   FPR E++W
Sbjct: 36  LGRKITFFCMATGFPRPEITW 56


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 443 LAWMAQRLVSSNRPTR*ASLASCKAPMAADWKRRSV 336
           L W     V  + P    S A  K P+   W+RR++
Sbjct: 158 LCWTQDEDVICSTPIGNLSHALLKDPVKEFWERRTL 193


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 383 PVKPIWWVC 409
           PVKP  W+C
Sbjct: 231 PVKPCPWIC 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,318
Number of Sequences: 438
Number of extensions: 3017
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)