Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K18
(428 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 134 5e-33
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 95 3e-21
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 77 2e-15
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 33 0.019
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.40
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 27 1.2
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 27 1.6
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 27 1.6
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 25 3.8
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 3.8
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 5.0
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 25 5.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 6.6
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 24 8.7
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 134 bits (324), Expect = 5e-33
Identities = 71/135 (52%), Positives = 91/135 (67%), Gaps = 1/135 (0%)
Frame = +3
Query: 9 ETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKDIEQSHQFYVNDAFTSKLHRVKIQTVA 188
+T+I DL R LQSLA K +IL+K PK +++ +FY N+ F S L R+KI TVA
Sbjct: 638 KTNIEVGDLKRNLQSLACAK--YKILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVA 695
Query: 189 -AKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLRARFLPSP 365
+ E + ER+ T KVDE RKH+ +A IVR+MK RK H L+AEVT QL RF PSP
Sbjct: 696 QTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSP 755
Query: 366 VVIKKRIEGLIEREY 410
++IK+RIE LIEREY
Sbjct: 756 MMIKRRIEALIEREY 770
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 95.5 bits (227), Expect = 3e-21
Identities = 53/135 (39%), Positives = 81/135 (60%)
Frame = +3
Query: 6 RETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKDIEQSHQFYVNDAFTSKLHRVKIQTV 185
+ T++ + DL R LQSL+ + R L+ PK+K FYVN+ FT KL+RVKI +
Sbjct: 590 KSTELSDIDLTRTLQSLSCARI--RPLVMVPKSKKPSPDTMFYVNEKFTDKLYRVKINQI 647
Query: 186 AAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLRARFLPSP 365
K E + E + + +V DR+ E++A+IVR+MK ++KM H LV V ++ R +P
Sbjct: 648 YLKEERQ-ENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPLV 706
Query: 366 VVIKKRIEGLIEREY 410
+K IE L+E+EY
Sbjct: 707 SDVKTAIEKLLEKEY 721
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 76.6 bits (180), Expect = 2e-15
Identities = 40/111 (36%), Positives = 68/111 (61%)
Frame = +3
Query: 78 RILIKHPKTKDIEQSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHE 257
++L+ K + + + +N+ F K RV++ + + E + E ET ++EDRK
Sbjct: 645 KVLLLGDNDKLGDPNSTYKINENFRMKKIRVQLN-LPIRSEQKQESLETHKTIEEDRKLL 703
Query: 258 IEAAIVRIMKARKKMAHTLLVAEVTEQLRARFLPSPVVIKKRIEGLIEREY 410
+++AIVRIMKAR+ + H +LV E +Q+++RF P IK+ I+ LIE+EY
Sbjct: 704 LQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTPKVSDIKQCIDMLIEKEY 754
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 33.1 bits (72), Expect = 0.019
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Frame = +3
Query: 15 DIPEKDLVRALQSLAMGKPTQRILIKHPKT-----KDIEQSHQFYVNDAFTSKLHRVKIQ 179
+I K+ + +++ K +R +KH + +D++++ + D+F S+L + K +
Sbjct: 121 EILPKEPAGSKEAMQQKKKEKRAALKHYREASDNEEDLKETDLYGDRDSFQSRLKQKKQR 180
Query: 180 TVAAKGESEPER----RETRNKVDEDRKHEIE 263
+ + E ER +E RNK++E K E+E
Sbjct: 181 SEFRASKREMERLERDQELRNKIEERNKKELE 212
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.7 bits (61), Expect = 0.40
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +3
Query: 9 ETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKDIEQSHQFYV-NDAFTSKLHRVKIQTV 185
E P D + S A+ K ++ K+ K K +Q+ + NDA + + IQ V
Sbjct: 198 EVSRPSTDTIGV--SSALSKKKKKRNRKNQKKKSTKQNIEATTENDALSESISTPDIQKV 255
Query: 186 AAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAH 308
A + + E+ + +E+R+ ++ A++ M H
Sbjct: 256 AQSEDVDAEQDTVADSKEEERRDIANDDLIVNANAKEPMHH 296
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 27 KDLVRALQSLAMGKPTQRILIKHPKTKDIEQSHQFYVNDAFTSKLHRVKIQTV 185
+DL+ L+S+ + T+ L KH KD + + + +S L+R+ I +
Sbjct: 8 QDLIWILKSVQSRRSTKGFLQKHSSLKDGSPNKKSFAQPISSSFLNRISITKI 60
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 169 LRSRRWPLRASRSRNDAKRETKSTRIGNTKS 261
LRSR W L R NDA +ST + +S
Sbjct: 288 LRSRSWNLLRRRPTNDASTSPRSTPSASPRS 318
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 26.6 bits (56), Expect = 1.6
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +3
Query: 90 KHPKTKDIEQ-SHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEA 266
KH + D E+ + +A + L+ K + + AK E R+E ++HE
Sbjct: 13 KHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQMKKTIKQHEERN 72
Query: 267 AIVRIMKARKKMAHTLLVAEVTEQLRARFLPSPVVIKKR 383
A R A+ + A + + ++ +A+ L S V K++
Sbjct: 73 ATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRK 111
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 3.8
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 102 TKDIEQSHQFYVNDAFTSKLHRVKIQTVAAKGE-SEPERRETRNKVDEDRKHEIE 263
TKD E+S + D K + + A GE S+ E++E ++K + K + E
Sbjct: 435 TKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSE 489
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +3
Query: 198 ESEPERRETR--NKVDEDRKHEIEAAIVRIM 284
ESE E R TR D+D+KH++++ ++++
Sbjct: 96 ESELEPRYTRVFRDEDDDQKHQLDSEAIKLL 126
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 150 TSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHE 257
TSK+ K ++++ K E + ET+++ + RKH+
Sbjct: 2 TSKMENNKDESISTKNALEEKSNETKDETSK-RKHD 36
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 5.0
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 153 SKLHRVKIQTVAAKG-ESEPE-RRETRNKVDEDRKHEIEAAIVRIMKARKK 299
S L R+K Q G E E RRE + E+RK +IEA ++K++KK
Sbjct: 35 SALKRLKRQQEWDAGREKRAEMRREKKRLRKEERKRKIEAG--EVVKSQKK 83
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 111 IEQSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKV 236
+E +FY A + + K+Q +AA PE T N +
Sbjct: 48 LESIDEFYAKRASIEREYASKLQELAASSADIPEVGSTLNNI 89
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 24.2 bits (50), Expect = 8.7
Identities = 23/101 (22%), Positives = 40/101 (39%)
Frame = -2
Query: 367 TGEGRKRARSCSVTSATSNVCAIFFLAFMMRTIAASISCFRSSSTLFLVSRRSGSDSPLA 188
+G G + +C FF++ I +SI + + STL LV GS +
Sbjct: 395 SGSGISAGGRTGILGMVVGIC--FFISLFFAPIFSSIPVWATGSTLVLV----GSMMMKS 448
Query: 187 ATVWILTLCNLEVKASLT*NW*DCSMSLVLGCLMSILCVGL 65
T+ + + A +T + S+ G + I+C L
Sbjct: 449 TTLINWSYLGDSIPAFITIALMPFTYSIAYGLIAGIICYAL 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,477,333
Number of Sequences: 5004
Number of extensions: 24259
Number of successful extensions: 107
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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