Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K17
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 263 6e-71
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 263 6e-71
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 200 8e-52
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 171 3e-43
02_02_0196 + 7685933-7685961,7686086-7686284 95 4e-20
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 46 2e-05
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.21
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.37
12_01_0981 + 9931542-9931606,9931779-9933105 31 0.86
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 31 0.86
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421... 28 4.6
11_06_0648 + 25873779-25874279,25874418-25875548 28 4.6
08_02_0286 - 15326876-15328135 28 4.6
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 28 6.1
01_01_0251 + 2058443-2058565,2058870-2059087,2060436-2060498,206... 28 6.1
12_02_1094 + 26032135-26032164,26032975-26033152,26033234-260340... 27 8.0
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 27 8.0
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 263 bits (645), Expect = 6e-71
Identities = 125/165 (75%), Positives = 140/165 (84%)
Frame = +1
Query: 73 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 252
MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 11 MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70
Query: 253 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 432
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 71 VTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
Query: 433 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 567
VVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 131 VVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 263 bits (645), Expect = 6e-71
Identities = 125/165 (75%), Positives = 140/165 (84%)
Frame = +1
Query: 73 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 252
MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 11 MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70
Query: 253 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 432
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 71 VTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
Query: 433 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 567
VVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 131 VVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 200 bits (487), Expect = 8e-52
Identities = 104/167 (62%), Positives = 122/167 (73%), Gaps = 2/167 (1%)
Frame = +1
Query: 73 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 252
MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 11 MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70
Query: 253 CTVRGAKAEEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLGIKYDPSIGIYGLD 426
TVRG KA ++LE GLK+ DN S T + + +YDPS GIYG+D
Sbjct: 71 VTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTGIYGMD 127
Query: 427 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 567
FYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 128 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 174
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 171 bits (417), Expect = 3e-43
Identities = 84/107 (78%), Positives = 93/107 (86%)
Frame = +1
Query: 73 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 252
MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 37 MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 96
Query: 253 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 393
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 97 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 95.1 bits (226), Expect = 4e-20
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +1
Query: 394 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 567
YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 68
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 46.0 bits (104), Expect = 2e-05
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Frame = +1
Query: 88 IRKLCLNICVG-ESGDR--LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCT 258
+ K+ +N +G E+G+ L A K L +TGQ PV +KA+ +V SF IR I + T
Sbjct: 105 VEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVT 164
Query: 259 VRGAKAEEILER----GL-KVREY-ELRRDNFSATGNFGFGIQEH-IDLGIKYDPSIGIY 417
+RG L+R GL + ++ + ++F GNF G+++ + I Y+
Sbjct: 165 LRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKN 224
Query: 418 GLDFYVV 438
G+D +V
Sbjct: 225 GMDVCIV 231
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 235 EKIAVHCTVRGAKAEEILERGLK 303
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 235 EKIAVHCTVRGAKAEEILERGLK 303
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 30.7 bits (66), Expect = 0.86
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -1
Query: 456 ETWSTKNNVEIQTIDTN--RWIIFDTQIDVFLDTKAKVACGREVITSQFIFSYFQSSLKD 283
+ ++ K+ +EI N ++ D+ ID F DT V +T + YF S LKD
Sbjct: 258 QRFAAKSKIEITETFRNLKQYGSVDSYIDKFEDTMTLVKRSNPTLTKDYFLDYFISGLKD 317
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 30.7 bits (66), Expect = 0.86
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = -1
Query: 273 LSTSNSAMD-SNLFITTNTKRPYSVSGL*EYRLLAG---KLFQHLSGTS*PITRFSDTDV 106
+S A+D SN+ TN K+P +VS + + LAG + ++ S + P+TR DV
Sbjct: 957 ISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDV 1016
Query: 105 QAEFSD 88
+ ++S+
Sbjct: 1017 KYKWSE 1022
>12_01_0536 -
4212206-4212369,4212476-4212629,4212713-4212811,
4212917-4213124,4214437-4214639,4214728-4214801,
4214968-4215043,4215256-4215360
Length = 360
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 136 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 300
+T A +++ +G FSK RY R GI K + V+ A+ E + E G+
Sbjct: 305 VTEAGGLVKDASGNDLDFSKGRYLDRDAGIIATNKYLMPLVVKAAQ-EAMKEEGI 358
>11_06_0648 + 25873779-25874279,25874418-25875548
Length = 543
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 154 VLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEE 282
+LE LTG++P FSK + R E+ C G EE
Sbjct: 398 MLEVLTGKKPYFSKEEWEKEKTEERVEEEKREECEQEGKNTEE 440
>08_02_0286 - 15326876-15328135
Length = 419
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 229 RNEKIAVHCTVR-GAKAEEILERGLKVREYELRR 327
R +++ V C V A A+E+L RG + + ELRR
Sbjct: 147 RGDRLVVECAVLLAADADEVLRRGPRPLDDELRR 180
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 511 SNDGGIQLCQSYVFYELH*NLVDQEQR 431
S DGG+ + ++YVF+++H + Q Q+
Sbjct: 71 SKDGGLDVIETYVFWDIHEAVRGQAQQ 97
>01_01_0251 +
2058443-2058565,2058870-2059087,2060436-2060498,
2060499-2060590,2060697-2060938
Length = 245
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 404 DGSYLIPKSMCSWIPKPKLPVAEKLSRLNSYSLTFNPLS-RISSALAP 264
D + +P C + P ++P L L++ LT++PLS +++ + P
Sbjct: 124 DSEFFVPDDRCRY-PIYRIPTGPTLCDLDACFLTYHPLSTQLTGGICP 170
>12_02_1094 +
26032135-26032164,26032975-26033152,26033234-26034017,
26034135-26034216,26034968-26035177
Length = 427
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 417 WFGFLRCSWSTRFQCSS*KT*DWQSWIPPSFDKRRRHEVVSTE 545
W +C + RFQ K +W+S F+ + RH V E
Sbjct: 320 WQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQAE 362
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 345 CGREVITSQFIFSYFQSSLKDFLSLSTSNSAMDSNLFITTNTKRP 211
CG EV +++ S Q + +L+ N D++ ITT TK P
Sbjct: 145 CGSEVQKQKYLPSLAQLTAVGCWALTEPNHGSDASSLITTATKVP 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,059
Number of Sequences: 37544
Number of extensions: 349583
Number of successful extensions: 879
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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