Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K16
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    29   0.47 
SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    27   1.4  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    27   1.9  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   2.5  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   5.8  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   5.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   5.8  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   7.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   7.6  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 121 SFIHVSTV*LLSPLNDDMDFSKSLNEIFGIDLEQ 222
           SFIHV    ++S +  D  F ++L E F IDL Q
Sbjct: 861 SFIHVHDCNVISEVIPDQRFLRTLTEHFMIDLRQ 894


>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 251 DDEKTNDEENCSKSIPKISFSDLEKSISSFSGDNNYTVETWIK 123
           DDE+  DEE   +S+   S S  +KS SS   D      T I+
Sbjct: 37  DDEEDEDEEENKESLQNDSHSVSQKSSSSSQNDQGSNKMTRIQ 79


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 251 DDEKTNDEENCSKSIPK 201
           DD+ ++DEE+C K  PK
Sbjct: 70  DDDSSDDEESCEKKKPK 86


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 215 KSIPKISFSDLEKSISSFSGDNNYTVETWIKD--FEDITE 102
           K+I ++S   LEKS+ +    NN   ET++K+  F D+ E
Sbjct: 256 KNINQLSERLLEKSLGNSKRFNNENEETYLKESGFHDLEE 295


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 251 DDEKTNDEENCSKSIPKISFSDLEKSISSFSGD-NNYTVETWIKDFEDITE 102
           DD +  + +   +S  K ++    KSI++FSGD ++ T  ++I     + E
Sbjct: 8   DDSRDGEGDKRLRSTTKSTWLSFLKSIATFSGDLSSLTAPSFILSSTSLIE 58


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 429 SIESCVQFHVDWRLFSIS 376
           S +SC  FH+ W L+S+S
Sbjct: 416 SHQSCPYFHIIWDLYSMS 433


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 155 DNNYTVETWIKDFEDITELMQWSGIE 78
           DN Y  ET  K  E+ TE+    G+E
Sbjct: 394 DNRYITETSNKVMENFTEIKNLGGLE 419


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 251 DDEKTNDEENCSKSIPKISFSDLEKSISSFSGDNNYTVETWIKDFED 111
           DDE TN E   S +IP    +D++ S+S+     +   +T I+D E+
Sbjct: 401 DDECTNTENTPSSNIP----ADVKDSLSADDYAYDTKRKTQIEDLEE 443


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 405 HVDWRLFSISIVSCILCTTLLA 340
           H+  RLFS+ I+  + CT  LA
Sbjct: 601 HLTERLFSMGILKILCCTATLA 622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,215
Number of Sequences: 5004
Number of extensions: 29511
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)