Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K16
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0510 + 24420402-24422582                                         31   0.61 
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563     29   1.9  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    29   2.5  
02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202     29   2.5  
11_06_0099 + 20070925-20073867                                         27   10.0 
07_01_0260 - 1938485-1938892                                           27   10.0 

>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
 Frame = -1

Query: 251 DDEKTNDEENCSKSIPKISFSDLEKSISSFSGDNNYTV-------ETWIKDFEDITELMQ 93
           DDE+  DEE C+K + K+  S  E       GD + +V          + + E ITE  +
Sbjct: 598 DDEEIGDEERCAKRLTKVDTSIAEP--RDVKGDRSKSVLFQACKLVRQLNELEGITEERR 655

Query: 92  W---SG--IEKIIYAKRLLTGTAQLFLRSSG 15
           W   +G  +E + YA    +G A     S G
Sbjct: 656 WRLIAGVWVEMLCYAAGKCSGNAHARQLSQG 686


>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
          Length = 571

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 137 ETWIKDFEDITELMQWSGIEKIIYAKRLLTGTA 39
           + W+KD +    L+Q + +EK +YA   L G A
Sbjct: 329 DDWLKDVDRKLNLVQCTPVEKTLYASHQLRGPA 361


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 251 DDEKTNDEENCSKSIPKISFSDLEKSISSFSGDNNYTVETWIKDFEDI 108
           +DE+ ND+EN + S PK   +  E    + +GD +   +  +KDF D+
Sbjct: 409 EDEEYNDKENIAPSTPKDDVNVHEPLQRALAGD-SCPDDAILKDFLDV 455


>02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202
          Length = 580

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 152 NNYTVETWIKDFEDITELMQWSGIEKIIYAKRLLTGTAQLFLRSS 18
           N  + E+WI+  E    L Q    EK++ A+  +TG A  ++ SS
Sbjct: 198 NGESPESWIRKAEKYFALNQTPEEEKVLVAEIYITGRADQWISSS 242


>11_06_0099 + 20070925-20073867
          Length = 980

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 227 ENCSKSIPKISFSDLEKSISSFSGDNNYTVETWI 126
           ++ ++S+P++SF +LEK   S +  N+    +WI
Sbjct: 239 QSANQSLPELSFKELEKLDLSNNDFNHPAESSWI 272


>07_01_0260 - 1938485-1938892
          Length = 135

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 315 SIVMVQGTQPTMLYIECSSQWIWKTVANQRETE 413
           S + VQG + +  +   + +W+W+T  N R  E
Sbjct: 64  SALAVQGGEESRRWCTFACKWLWRTSKNNRTQE 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,234,090
Number of Sequences: 37544
Number of extensions: 161171
Number of successful extensions: 491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)