Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K16
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117207-22|CAO82073.1|  505|Caenorhabditis elegans Hypothetical...    29   1.7  
Z72506-4|CAA96619.1|  590|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z48621-2|CAA88547.1|  536|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a prote...    27   8.9  

>AL117207-22|CAO82073.1|  505|Caenorhabditis elegans Hypothetical
           protein Y60A3A.27 protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -1

Query: 251 DDEKTNDEENCSKSIPKISFSDLEKSISSFSGDNNYTVETWIKDFEDI 108
           DDE     +    + P+ +   ++ +++ FS  NN  + +W+ DF  I
Sbjct: 6   DDENKPSAQRALLTDPQKALRAIQGTVTKFSDGNNAELRSWLIDFSRI 53


>Z72506-4|CAA96619.1|  590|Caenorhabditis elegans Hypothetical
           protein F07A5.3 protein.
          Length = 590

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 161 SGDNNYTVETWIKDFEDITELMQWSGIEKI 72
           S D  Y +ET  KD   I  + +W+GI ++
Sbjct: 244 SRDEEYWIETGKKDINQIGNVQRWAGITEL 273


>Z48621-2|CAA88547.1|  536|Caenorhabditis elegans Hypothetical
           protein R07B1.3 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 161 SGDNNYTVETWIKDFEDITELMQWSGIEKI 72
           S D NY + T   DF  +  +  W+G+E++
Sbjct: 238 SYDENYWINTGYNDFNKLGFVESWAGLEQL 267


>Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical
           protein Y57G11C.7 protein.
          Length = 571

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
 Frame = -1

Query: 206 PKISFSDLEKSISSFSGDNNYTVETWIKDF------EDITELMQWSGIEKI-IYAKRLLT 48
           PK+ FSD+   +SSF   + Y  E  I+ F      ++I E+ QW   + I IY++  + 
Sbjct: 69  PKLRFSDVISILSSFK--SGYLEEIRIQSFKGYEQSQEILEMEQWKQAKAIHIYSRGFVI 126

Query: 47  GTAQLFLRSS 18
              + F   S
Sbjct: 127 FPIERFFNFS 136


>AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a protein
           protein 6 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -1

Query: 212 SIPKISFSDLEKSISSFSGDNNYTVETW----IKDFEDITELMQW 90
           SI  +S +D+  ++  F      ++E W    I DFE +T + QW
Sbjct: 177 SIIFVSPNDIISTLPYFDSQELKSIELWCLETIDDFEQLTRMDQW 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,409,616
Number of Sequences: 27780
Number of extensions: 158946
Number of successful extensions: 528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)