Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K16
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.6  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 248 DEKTNDEENCSKSIPKISFSDLEKSISSFSGDNNY 144
           D++  +     K I  +S ++   +IS+++ DNNY
Sbjct: 69  DKRERERSKERKIISSLS-NNYISNISNYNNDNNY 102


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 325 WYRERSQQCCT*NAAHNGYGKQSPINV 405
           +Y+ R  +  T +A+HN   + SP++V
Sbjct: 589 YYKIRDSKVKTLDASHNRITELSPLSV 615


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 408 TERNSQLTVPRISVTN 455
           T  NSQL +PR S+ +
Sbjct: 731 TSNNSQLQIPRASLVS 746


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 75  LFYSAPLHEFSDIFKILY 128
           L+Y   L E S +FK+ Y
Sbjct: 99  LYYPQLLREMSALFKLFY 116


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 75  LFYSAPLHEFSDIFKILY 128
           L+Y   L E S +FK+ Y
Sbjct: 99  LYYPQLLREMSALFKLFY 116


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 245 EKTNDEENCSKSIPKISFSDLEKSISSFSGDNNY 144
           +KT  E +  + I     ++   +IS+++ +NNY
Sbjct: 307 DKTERERSKERKIISSLSNNYISNISNYNNNNNY 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,648
Number of Sequences: 438
Number of extensions: 2046
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)