Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K15
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 184 6e-48
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 184 6e-48
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 3.1
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 4.2
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.3
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 7.3
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 7.3
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 24 9.6
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 24 9.6
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 184 bits (448), Expect = 6e-48
Identities = 84/151 (55%), Positives = 106/151 (70%)
Frame = +2
Query: 2 HEVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIV 181
++ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++
Sbjct: 16 YQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVL 75
Query: 182 CAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTGDEYNVEPV 361
A+S ELPRYGIK GL N+ AAY TG Y G TE G+ E +
Sbjct: 76 AHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAI 135
Query: 362 DNGPGAFRCYLDVGLARTTTGARVFGAMKGA 454
++GP F+ +LDVGL RT+TG+RVFGAMKGA
Sbjct: 136 EDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 166
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 184 bits (448), Expect = 6e-48
Identities = 84/151 (55%), Positives = 106/151 (70%)
Frame = +2
Query: 2 HEVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIV 181
++ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++
Sbjct: 16 YQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVL 75
Query: 182 CAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTGDEYNVEPV 361
A+S ELPRYGIK GL N+ AAY TG Y G TE G+ E +
Sbjct: 76 AHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAI 135
Query: 362 DNGPGAFRCYLDVGLARTTTGARVFGAMKGA 454
++GP F+ +LDVGL RT+TG+RVFGAMKGA
Sbjct: 136 EDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 166
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 138 VTSLLD-NRTISRYFGVLYLFLSWTTRR 58
V LD N + RY+GVL+ FL + T R
Sbjct: 120 VYEFLDGNNLLCRYYGVLFHFLDFLTLR 147
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 4.2
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -2
Query: 450 PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVAPV*RLSKPSL 289
PF +T P++ + +S HL S+ S LY S P S P L
Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLL 270
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 7.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -2
Query: 450 PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVA----PV*RLSKPSLCN 283
P AP + +P+ KP++ N S+ + SSP+ S A PV + S P L
Sbjct: 395 PSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASNAENKPPVAQQSPPVLLP 454
Query: 282 NL 277
L
Sbjct: 455 TL 456
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +2
Query: 125 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAA 247
N+D + + D VC +++ + YG + G +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 360 TGSTLYSSPVTSVAPV*RLSKPSLCNNLLASNRPVQ 253
TGS SS V S +SKPS N L +P+Q
Sbjct: 338 TGSDKLSSHVQSETENAPVSKPSKPNTLTEDEKPLQ 373
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -3
Query: 122 ITVQSVGTLECCICFYPGQRGVCEHSSQFFPHDAS 18
I + L C C +P +G+C+ S P D++
Sbjct: 62 IKIGDYAFLYCSNCKFPHIKGLCQICSNSHPDDSA 96
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 414 VRAKPTSK*HLNAPGPLSTGSTLYSSPVT 328
V A P N P P+ST +T +PVT
Sbjct: 180 VAASPNPSTPSNGPAPVSTTATPSRNPVT 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,126
Number of Sequences: 5004
Number of extensions: 39533
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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