Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K13
(397 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 28 0.46
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.60
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 2.4
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 25 3.2
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 3.2
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 4.3
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 25 4.3
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 4.3
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 25 5.6
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 24 7.4
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 24 7.4
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 24 7.4
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 24 9.8
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 24 9.8
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 24 9.8
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 24 9.8
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 0.46
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 224 WHSLAESSKIFLQRLSSWSWAYCDNCWNR 310
W ++AE K+ L +WA+CD + R
Sbjct: 335 WRTIAEREKLNAHALEVGTWAFCDFLFGR 363
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.60
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 392 NNIKSTHYSFKLMAFTIMTMTTTSNQLVYSNSYHSKPKTKRKASEEKFSSSLPASA 225
++ ST S + + +T +++S+ S+S HS + K+S SSS P S+
Sbjct: 366 SSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSS 421
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 2.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 326 TSNQLVYSNSYHSKPKTKRKASEEKFSSSLPASAKSRVVPPSLISNPGV 180
T +Q + H + ++AS + ++ A KSR P S +S+PG+
Sbjct: 11 TKDQDDSDDDRHGPVEVPKEASADVMATRKIAKPKSRKRPTSGVSSPGI 59
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 3.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 356 MAFTIMTMTTTSNQLVYSNSYHSKPKTKRKASEEKFSSSLPASAKSRV 213
+A ++ T SN++ S +P K +E ++ PAS SRV
Sbjct: 173 LALSLSESTAQSNKVENPQSTKDEPLQKTNQRQESNLATSPASTVSRV 220
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 3.2
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = -3
Query: 323 SNQLVYSNSYHSKPKTKRKASEEKFSSSLPASAKSRVVPPSLISNP 186
S L + H+ P T + KF + L S+ P++ +NP
Sbjct: 264 SPALTVESMVHAAPSTTTSSRFSKFFNGLAGPETSKTSTPNMSNNP 309
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 4.3
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 69 FITGHRTMYLTLRSFADIKGIPQLEELEKALAAKG--LKDPWIRNEAW 206
+I G Y + D K E+ + + K LKDPW+R W
Sbjct: 400 YINGVEEQYQQMIQLVDQKLSQYAEKAKDLINTKDTVLKDPWLRQLDW 447
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 320 NQLVYSNSYHSKPKTKRKASEEKFSSSLPASAKSRVVPPSL 198
N +VY + K S+E ++ ++ A K +PPSL
Sbjct: 348 NDIVYVRERNQIDHVKYLVSKEMYAEAIDAVKKLPEIPPSL 388
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 4.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 338 TMTTTSNQLVYSNSYHSKPKTKRKASEEKFSSSL 237
T+ +N V SNS SK K K+K S SL
Sbjct: 511 TIVLPNNSTVRSNSVKSKKKKKKKPVVPSSSGSL 544
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 350 FTIMTMTTTSNQLVYSNSYHSKPKTKRKASEE 255
FT+ M N ++YS Y PK + S E
Sbjct: 192 FTVRRMLPFCNVIIYSYHYLLDPKIAERVSRE 223
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 287 KPKTKRKASEEKFSSS 240
KPK K+K S+EK S S
Sbjct: 98 KPKAKKKNSKEKISKS 113
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 7.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 274 RGKPLKKNFRALCQRVPNPGW-YLQASFLIQGS 179
R PL+ F LC+R NP Y+ + QGS
Sbjct: 316 REAPLRSGFEKLCKRNKNPPLSYVYYDYHKQGS 348
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 193 LIQGSLRPLAARAFSSSSSCGIPFMS 116
+IQ +P ++F+SSS +PF+S
Sbjct: 685 IIQKLKKPSREKSFTSSSEYSLPFIS 710
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/31 (29%), Positives = 13/31 (41%)
Frame = +2
Query: 212 PPWIWHSLAESSKIFLQRLSSWSWAYCDNCW 304
P WI K + R W + Y ++CW
Sbjct: 164 PTWISVYRNVPEKAWANRCVEWYFRYINSCW 194
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 299 SYHSKPKTKRKASEEKFSSSLPASAKSRV 213
S S PKT+ S +F SLPA+ V
Sbjct: 314 SIPSSPKTEGAPSNAQFRPSLPATPNGSV 342
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 263 SEEKFSSSLPASAKSRVVPPSLISNPGVLE 174
SE K S PA+ + PPS ++NP E
Sbjct: 259 SEPKHS---PATVNEHISPPSALTNPSTEE 285
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 23.8 bits (49), Expect = 9.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 302 NSYHSKPKTKRKASEEKFSSSLPASAKSR 216
+S SK KTKRKA S S+ +SA R
Sbjct: 266 SSSKSKSKTKRKARTALSSVSMSSSALFR 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,507
Number of Sequences: 5004
Number of extensions: 27246
Number of successful extensions: 106
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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