Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K13
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1149 - 9134390-9134600,9134732-9134790,9135650-9135724,913... 31 0.44
04_03_0022 + 9615468-9615568,9617300-9617474,9617563-9617682 29 1.4
01_01_0402 + 3046504-3046582,3047265-3047487,3047954-3048107,304... 28 3.1
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 27 4.1
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 27 7.2
03_02_0435 - 8406262-8406419,8406499-8406547,8406577-8407458,840... 27 7.2
02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152... 27 7.2
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 26 9.6
>01_01_1149 -
9134390-9134600,9134732-9134790,9135650-9135724,
9135815-9135934,9136012-9136183,9136277-9136335,
9136516-9136572,9136900-9136998,9137088-9137114,
9137607-9137649,9137779-9138023
Length = 388
Score = 30.7 bits (66), Expect = 0.44
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3
Query: 365 FKLMAFTIMTMTTTSNQLVYSNSYHS-KPKTKRKASEEKFSSSLPASAKSRVVPPSLIS 192
+ + +TI T+ T + YS+ YH K K R S+ + AS + +++ P L S
Sbjct: 102 YMALLYTITTVILTGQTVYYSHIYHRLKAKKARATSKPQRHQRADASLREKLLGPKLPS 160
>04_03_0022 + 9615468-9615568,9617300-9617474,9617563-9617682
Length = 131
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 295 ITVSPRPRGKPLKKNFRALCQRVPNPGW 212
+ + P PRGKP + RA+ NPGW
Sbjct: 97 VFILPYPRGKPGNRGNRAVTGGKLNPGW 124
>01_01_0402 +
3046504-3046582,3047265-3047487,3047954-3048107,
3048253-3048355,3048554-3048738,3048972-3049051,
3049433-3049511,3050015-3050096,3050221-3050279,
3050379-3050684,3050825-3050989
Length = 504
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 229 VPNPGWYLQASFLIQGSLRPLAARAFSSSSS 137
V G L+++ L QG+LRPL FSS S
Sbjct: 204 VAGEGAELRSTLLAQGALRPLTRLMFSSKGS 234
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 341 MTMTTTSNQLVYSNSYHSKPKTKRKASEEKFSSSLPASAKSRVV 210
+T S+ +VY Y S+ + KRK S+E+ + L A K +V+
Sbjct: 274 VTFENKSDAVVYQELYSSQYR-KRKVSKEERDACLKAELKVKVI 316
>12_02_0133 -
14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -3
Query: 314 LVYSNSYHSKPKTKRKASEEKFSSSLPASAKSRVVPPSLISN 189
++ + + KPK+ A++ K SS LP + +S+VV P + N
Sbjct: 483 ILAKSPFFKKPKSCESANKAK-SSILPPTEESKVVNPPVSHN 523
>03_02_0435 -
8406262-8406419,8406499-8406547,8406577-8407458,
8408976-8409127,8410346-8410616
Length = 503
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 215 PWIW-HSLAESSKIFLQRLSSWSWAYC--DNCWNRQA 316
PW W H+ +E +I LS WS D WN+ +
Sbjct: 323 PWFWGHATSEKGEIAQMYLSGWSIPSLGEDLTWNKSS 359
>02_05_0962 +
33114226-33114684,33114806-33114853,33115166-33115286,
33115760-33116008,33116149-33116302,33116493-33116985,
33117524-33117596,33118285-33118343
Length = 551
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 39 NIIS*RWV-AMF-ITGHRTMYLTLRSFADIKGIPQLEELEKALAAKG 173
N+ RW+ A F +T H T++L S +I GIP E++K + G
Sbjct: 122 NVPPGRWLTAPFNLTSHMTLFLAEGS--EILGIPSFREVQKLVLLSG 166
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = -3
Query: 383 KSTHYSFKLMAFTIMTMTTTSNQLVYSNSYHSKPKTKRKASEEKFSSSLPASAKSRVVPP 204
KS +M +++++ N ++ S PK R A+E+ LPA K + P
Sbjct: 210 KSAPEVLSIMDTVLLSVSVYINSSMFHGQKQSTPKAARAATEDSTFHPLPALFKLTGLSP 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,839
Number of Sequences: 37544
Number of extensions: 190903
Number of successful extensions: 648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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