Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K12
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 67 1e-12
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 28 0.78
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 27 1.4
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 1.8
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 3.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.5
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 7.3
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 9.6
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 9.6
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 9.6
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 67.3 bits (157), Expect = 1e-12
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Frame = +3
Query: 240 QIGGEKNGGTRTVLL--KSRKSFYPTQDKIRGRSHGKSFSKHVRRT--RPNLTPGTVCIL 407
++ G KNGG R VL ++ +YP + + K K VR T R +L PGTVCIL
Sbjct: 5 KVNGAKNGGERMVLPAGEAAAKYYPAYRE----NVPKKARKAVRPTKLRASLAPGTVCIL 60
Query: 408 LAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 545
LAGR GKR TGP+ N P+RR+ RYVI TS
Sbjct: 61 LAGRFRGKR-VVVLSQLEDTLVVTGPYKVNGVPIRRVNHRYVIATS 105
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 0.78
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 118 SETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQP 228
SET S S K+G T+RR S R +KLK +P
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +3
Query: 270 RTVLLKSRKSFYPTQDKIRGR----SHGKSFSKHVRRTRPNLTP 389
RT+L + K FYP GR H SK R+ R TP
Sbjct: 102 RTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTP 145
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 10 VGILWLHHSPMWRRNPPQPQPAVSRSR 90
VG L L+ SP + QPQP SRSR
Sbjct: 266 VGSLRLYRSPSIPNDVEQPQPQSSRSR 292
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 76 VSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK 243
++ S ++RG T E V + G T+ Y SLS+ ++K +N P SK
Sbjct: 189 LATSASNSDRGASTPEMVVKAEKREGSTSPIPYSSLSI--AERIKQAQNTPFLESK 242
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 439 CSLECCRVVCYSSLDLL 489
CSLE +VCYSSL +L
Sbjct: 764 CSLEVGPIVCYSSLKVL 780
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 297 SFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 434
+FY R SH S S ++P LT + +L + H +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 493 KAKGPVKSSRPLGNTPTSTTR 431
KAK P+KSS+ N P S R
Sbjct: 3 KAKSPIKSSKKSVNQPKSVLR 23
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 449 SVAEWSATLHWTFCFQRVSPAQDSAAL 529
S+ ++SA H CF SP Q++ A+
Sbjct: 266 SLIKYSAAAHTRICFAVNSPCQEALAI 292
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 219 SWAFQLSGSSYRQTYI*PSCGTSCFWRNG 133
SW QLS SS+ +C SC RNG
Sbjct: 196 SWVVQLSFSSWNVVGDSATCLLSCSSRNG 224
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 463 PLGNTPTSTTRLPACLPANR 404
P N T TRLP +P+NR
Sbjct: 330 PRFNLATGATRLPFAIPSNR 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,632
Number of Sequences: 5004
Number of extensions: 48100
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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