Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K12
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 98  QTEEL*PRKRCTPFLQKQDVPQEGYI 175
           +T  L PRKRC   L+  ++ + G I
Sbjct: 460 ETLILPPRKRCKMILESMEIERNGLI 485


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 545 RCSN-DIALRNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQNAH 396
           RC+N D    N       +++ SS+   +  Q++N+H+  A  S++  N H
Sbjct: 413 RCANFDNQDNNHYNHNHNQARHSSK---SDNQNNNQHNDQAHHSSKSNNRH 460


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 411 PTECTLCRE*G*VSSY 364
           PTEC  CR  G   +Y
Sbjct: 37  PTECVFCRNNGEEEAY 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,137
Number of Sequences: 438
Number of extensions: 3507
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)