Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K11
(424 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 69 3e-13
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.23
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 0.52
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 26 2.1
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 3.7
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 4.8
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 24 8.5
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 68.9 bits (161), Expect = 3e-13
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +1
Query: 25 YDDKGEPQPPNNWLSTFNTSAWTFNERRNAFYLNQHGEGLADLNFRNADVRSHFDKVIEL 204
Y++KGE PPNNW S F+TSAW ++E +YL+ G DLN+ VR ++
Sbjct: 141 YNEKGERLPPNNWRSYFDTSAWEWDEATQEYYLHLWSVGQPDLNWETPKVREAVHDILRF 200
Query: 205 WMKSGASGVRLN 240
W+ G G RL+
Sbjct: 201 WLDRGVDGFRLD 212
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.23
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 HEGTAVTRTTTRESHNPLT-TGCLRLTHPLGHSTSAVTLST*ISTAKVW---LTLTSGTL 169
+ TA+T +T + P+T + L + P+ ST A+ ST I+++ V +TS ++
Sbjct: 703 NSSTAITSSTALNTSTPITSSSVLNSSTPITSST-ALNTSTPITSSSVLNSSTPITSSSI 761
Query: 170 MSVVTLIKSSSYG*SLVPAVS 232
++ T I SSS S P S
Sbjct: 762 LNSSTPITSSSVLNSSTPITS 782
Score = 29.5 bits (63), Expect = 0.23
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 HEGTAVTRTTTRESHNPLT-TGCLRLTHPLGHSTSAVTLST*ISTAKV---WLTLTSGTL 169
+ TA+T +T + P+T + L + P+ ST V ST I+++ V +TS T
Sbjct: 1015 NSSTAITSSTALNTSTPITSSSVLNSSTPITSST-VVNTSTPITSSTVVNSSTPITSSTA 1073
Query: 170 MSVVTLIKSSSYG*SLVPAVS 232
++ T I SSS S P S
Sbjct: 1074 LNTSTPITSSSVLNSSTPITS 1094
Score = 29.5 bits (63), Expect = 0.23
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 HEGTAVTRTTTRESHNPLT-TGCLRLTHPLGHSTSAVTLST*ISTAKVW---LTLTSGTL 169
+ TA+T ++ S P+T + L + P+ ST V ST I+++ V +TS T+
Sbjct: 3223 NSSTAITSSSVLNSSTPITSSSVLNSSTPITSST-VVNTSTPITSSSVLNSSTPITSSTV 3281
Query: 170 MSVVTLIKSSSYG*SLVPAVS 232
++ T I SS+ S P S
Sbjct: 3282 VNTSTPITSSTVVNSSTPITS 3302
Score = 28.3 bits (60), Expect = 0.52
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 HEGTAVTRTTTRESHNPLT-TGCLRLTHPLGHSTSAVTLST*ISTAKVWLT---LTSGTL 169
+ TA+T ++ S P+T + L + P+ ST V ST I+++ T +TS ++
Sbjct: 3115 NSSTAITSSSILNSSTPITSSSILNSSTPITSST-VVNSSTPITSSTTLNTSTPITSSSV 3173
Query: 170 MSVVTLIKSSSYG*SLVPAVS 232
++ T I SSS S P S
Sbjct: 3174 LNSSTAITSSSIVNSSTPITS 3194
Score = 27.5 bits (58), Expect = 0.91
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 HEGTAVTRTTTRESHNPLT-TGCLRLTHPLGHSTSAVTLST*ISTAKVW---LTLTSGTL 169
+ TA+T ++ S P+T + L + P+ ST+ T ST I+++ V +TS ++
Sbjct: 3175 NSSTAITSSSIVNSSTPITSSSVLNSSTPITSSTTLNT-STPITSSSVLNSSTAITSSSV 3233
Query: 170 MSVVTLIKSSSYG*SLVPAVS 232
++ T I SSS S P S
Sbjct: 3234 LNSSTPITSSSVLNSSTPITS 3254
Score = 26.6 bits (56), Expect = 1.6
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +2
Query: 2 HEGTAVTRTTTRESHNPLTTGCLRLTHPLGHSTSAVTLST*ISTAKVWLTLTSGTLMSVV 181
+ TA+T +T + P+T+ + + S+S + ST ++++ V L S T ++
Sbjct: 3319 NSSTAITSSTALNTSTPITSSSVLNSSTAITSSSILNSSTPVTSSSV---LNSSTPITSS 3375
Query: 182 TLIKSSS 202
T++ SS+
Sbjct: 3376 TVVNSST 3382
Score = 25.8 bits (54), Expect = 2.8
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 HEGTAVTRTTTRESHNPLT-TGCLRLTHPLGHSTSAVTLST*ISTAKVWLT---LTSGTL 169
+ TA+T ++ S P+T + L + P+ ST V ST I+++ T +TS ++
Sbjct: 3343 NSSTAITSSSILNSSTPVTSSSVLNSSTPITSST-VVNSSTPITSSTALNTSTPITSSSV 3401
Query: 170 MSVVTLIKSSSYG*SLVPAVS 232
++ T I SS+ S P S
Sbjct: 3402 LNSSTPITSSTVVNSSTPITS 3422
Score = 25.4 bits (53), Expect = 3.7
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +2
Query: 11 TAVTRTTTRESHNPLTTGCLRLTHPLGHSTSAVTLST*ISTAKVWLT---LTSGTLMSVV 181
T +TR + S P+T+ + + S+S + ST I+++ T +TS ++++
Sbjct: 586 TPITRYSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSS 645
Query: 182 TLIKSSSYG*SLVPAVS 232
T I SSS S P S
Sbjct: 646 TPITSSSVLNSSTPITS 662
Score = 25.4 bits (53), Expect = 3.7
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +2
Query: 2 HEGTAVTRTTTRESHNPLTTGCLRLTHPLGHSTSAVTLST*ISTAKVWLTLTSGTLMSVV 181
+ TA+T ++ S P+T+ + + S+S + ST I+++ + L S T ++
Sbjct: 3091 NSSTAITSSSIVNSSTPITSSSVLNSSTAITSSSILNSSTPITSSSI---LNSSTPITSS 3147
Query: 182 TLIKSSS 202
T++ SS+
Sbjct: 3148 TVVNSST 3154
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 0.52
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 11 TAVTRTTTRESHNPLTTGCLRLTHPLGHSTSAVT 112
T+ TTT S +P+TTG T G+ ++VT
Sbjct: 155 TSFVPTTTESSIHPITTGFYNTTFTTGYFNTSVT 188
>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = +1
Query: 40 EPQPPNNWLSTFNTSAWTFNERRNAFYLNQHGEGLADLNFRNADVRSHFDKVIELWMK 213
+P+ + W +F S + F HG A N + + R +FD ++++K
Sbjct: 184 DPEEVDAWKKSFENSPYFSESYFETFGKMHHGWMAARANLSDPENRKYFDLGYQIFLK 241
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 3.7
Identities = 9/46 (19%), Positives = 25/46 (54%)
Frame = +2
Query: 50 PLTTGCLRLTHPLGHSTSAVTLST*ISTAKVWLTLTSGTLMSVVTL 187
PL + + HP H+T+++ + +S + + ++ G + ++ T+
Sbjct: 426 PLISLSSKQLHPRHHNTASIVVQVGVSLSNTFGSICGGAIYNITTV 471
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.0 bits (52), Expect = 4.8
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 26 TTTRESHNPLTTGCLRLTHPLGHSTSAVTLST*ISTAKVWLTLTSGTLMSVVTLIKSSSY 205
TT S P+ T + + P G+S+ + + T T +GT S VT+I + +
Sbjct: 764 TTLTGSSGPVVTNTVEI--PYGNSSYIIPTTIVTGTVTTVTTGYTGTETSTVTVIPTGTT 821
Query: 206 G 208
G
Sbjct: 822 G 822
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 7 GNSSNSYDDKGEPQPPNNWLSTFNTSAW 90
GNS NS P +W ++F+ AW
Sbjct: 20 GNSFNSIHATSFGMSPQSWGNSFSGQAW 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,532,320
Number of Sequences: 5004
Number of extensions: 26870
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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