Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K11
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0261 - 6933962-6934513 33 0.13
06_01_0879 + 6746950-6747288,6747794-6748495 31 0.51
04_04_1542 - 34264994-34265331,34266195-34267029 29 1.5
02_03_0113 - 15381289-15381556,15381633-15381985,15382184-153822... 29 1.5
06_03_0469 + 21099983-21100432,21101310-21101597,21102033-211023... 29 2.0
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890... 28 2.7
07_03_1728 + 29076733-29079069 28 3.6
06_01_0333 + 2404459-2404857,2404917-2405009,2405428-2405522,240... 28 3.6
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 27 4.7
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 27 6.2
12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 27 8.2
07_01_1121 - 10344330-10344725 27 8.2
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539... 27 8.2
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 27 8.2
>03_02_0261 - 6933962-6934513
Length = 183
Score = 32.7 bits (71), Expect = 0.13
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -2
Query: 162 PEVKVSQTFAVLIQVESVTALVECPSGCVKRRQPVVRGLWLSLVVVRVTA 13
P V V++ + V ALVE +G V RR P +RG+ L V V A
Sbjct: 64 PAVLAEVAALVVVALTEVAALVEAAAGAVARRLPDLRGVAAVLAEVAVLA 113
>06_01_0879 + 6746950-6747288,6747794-6748495
Length = 346
Score = 30.7 bits (66), Expect = 0.51
Identities = 29/105 (27%), Positives = 44/105 (41%)
Frame = +1
Query: 76 NTSAWTFNERRNAFYLNQHGEGLADLNFRNADVRSHFDKVIELWMKSGASGVRLNKARHL 255
N A +FNE+ A + + LA+ FR + +F +I+ G + R
Sbjct: 231 NALARSFNEQAGAA-VARLSSSLANATFRFGEAYDYFQDIIDRPAAHGFNNSRAPCCSLG 289
Query: 256 LVDPSLGNEDPDSGRGGALDADHTHYAFWQHTHTTDQSGLVPLLE 390
V P+L P S L D + Y FW H TD++ + LE
Sbjct: 290 RVRPTL-TCTPLS----TLCKDRSQYVFWDEYHPTDRANELIALE 329
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 361 RSCACVARTRSACGPRRERRH 299
RS VART AC +RERRH
Sbjct: 316 RSATVVARTLVACEEKRERRH 336
>02_03_0113 -
15381289-15381556,15381633-15381985,15382184-15382231,
15382260-15382439,15382835-15382954
Length = 322
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 109 NAFYLNQHGEGLAD--LNFRNADVRSHFDKVIE 201
NA +L HGEG+ D ++F +RS KV+E
Sbjct: 137 NAAHLTTHGEGILDEAISFTKRQLRSLMPKVVE 169
>06_03_0469 +
21099983-21100432,21101310-21101597,21102033-21102300,
21102860-21103077
Length = 407
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 298 RGGALDADHTHYAFWQHTHTTD 363
+GGA+ +D T YAF+ H TD
Sbjct: 356 KGGAICSDRTKYAFFDGLHPTD 377
>04_04_0969 -
29787617-29787919,29788019-29788180,29788962-29789093,
29789708-29789760,29790518-29791007
Length = 379
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 7 GNSSNSYDDKGEPQPPNNWLSTFNTS 84
G+SS+ DD G P PN STFN S
Sbjct: 325 GSSSDHSDDPGSPMGPNG--STFNNS 348
>07_03_1728 + 29076733-29079069
Length = 778
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 10 NSSNSYDDKGEPQPPNNWLSTFNTSAWTFNER 105
+S S+DD+G P PP W + +A N +
Sbjct: 163 SSHPSFDDRGVPPPPARWKGSCRDTAARCNNK 194
>06_01_0333 +
2404459-2404857,2404917-2405009,2405428-2405522,
2406146-2406219,2406307-2406395,2406745-2406858
Length = 287
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 340 RTRSACGPRRERRHDQSQDPRCPAKDPPTD 251
R S C P +RH DPR P PP D
Sbjct: 43 RVSSVC-PVASQRHSDYFDPRAPPPPPPRD 71
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 142 LADLNFRNADVRSHFDKVIELWMKSGASGVRLNKA 246
LA L + +A V++HFD +W+ VRL KA
Sbjct: 678 LARLVYNDARVQNHFDIQAWVWVSEVFDEVRLTKA 712
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 10 NSSNSYDDKGEPQPPNNWLSTFNTSAWTFNER 105
++S+ PPNN S S+WTF+E+
Sbjct: 192 STSSDMSSLASQGPPNNPASLRRASSWTFDEK 223
>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
Length = 266
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 76 NTSAWTFNE-RRNAFYLNQHGEG 141
N AWT E +R ++NQHGEG
Sbjct: 13 NKGAWTKEEDQRLIAHINQHGEG 35
>07_01_1121 - 10344330-10344725
Length = 131
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +1
Query: 175 RSHFDKVIELWMKSGASGVRLNKARHLLVDPSLGNEDPDSGRGGALD 315
R K++E WM+ A R KAR L GR G ++
Sbjct: 72 REENQKMMEAWMRVSALAARSTKARSASATGGLRAAGIGQGRAGVME 118
>04_04_1608 -
34753321-34753332,34753434-34753628,34753868-34753972,
34754176-34754219,34754645-34754700,34755986-34756146
Length = 190
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 328 ACGPRRERRHDQSQDPRCPAKDP 260
A GP RE +D DP PA+ P
Sbjct: 134 ALGPDRESDYDSDDDPSVPARLP 156
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/76 (19%), Positives = 31/76 (40%)
Frame = +1
Query: 40 EPQPPNNWLSTFNTSAWTFNERRNAFYLNQHGEGLADLNFRNADVRSHFDKVIELWMKSG 219
+P PP + F+ N FY+N +GE L D + + + + +E ++
Sbjct: 285 DPTPPYTVIFHFSELEILTNNASRQFYINLNGEPLIDTAYEPTYLTARYLYGLEPLERTS 344
Query: 220 ASGVRLNKARHLLVDP 267
+ +N + + P
Sbjct: 345 RYNITINATANSTLPP 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204,303
Number of Sequences: 37544
Number of extensions: 215783
Number of successful extensions: 799
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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