Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K11
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    33   0.064
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    30   0.59 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    27   7.3  
U49941-4|AAP46282.1|  271|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U49941-3|AAP46281.1|  451|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 33.5 bits (73), Expect = 0.064
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 73  FNTSA-WTFNERRNAFYLNQHGEGLADLNFRNADVRSHFDKVIELWMKSGASGVRLNKAR 249
           FN S  + F+   N  YL         LN++NADV+S  +  I+ ++  G  G  ++   
Sbjct: 224 FNESNFYPFHGANNIKYLGYPSSQNPVLNWKNADVKSTINGAIQKFLDLGVDGFHIDHIS 283

Query: 250 HLLVDPSLGNEDPD 291
            L VD S G  + D
Sbjct: 284 QLAVD-SKGRPNHD 296


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 295 GRGGALDADHTHYAFWQHTHTTDQSGLVPLLEHFAQTVAASI 420
           GR G  D   T Y F+ HT+ +    L+ +L+   QTV  ++
Sbjct: 465 GRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQAL 506


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 412 RRQFEQSARAEARDRTGRSCACVARTRSACGPRRERRHDQSQDP 281
           RR+ E+  R E  +   ++ A VA    +  PRR R    S+ P
Sbjct: 271 RREIERKKRHEEAELRQKAIASVAARAKSGSPRRRRSPSASKSP 314


>U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical
           protein F33G12.5 protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 319 PRRERRHDQSQDPRCPAKDPPT 254
           P RE+ H  S D + P+  PPT
Sbjct: 843 PEREKVHGNSDDEKIPSTPPPT 864


>Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical
           protein H13N06.2 protein.
          Length = 454

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 20  TRTTTRESHNPLTTGCLRLTHPLGHSTSAVTLST*ISTA 136
           T T T ES +  TT    +T P+  STS+ + +T + T+
Sbjct: 221 TTTMTPESSSVTTTTAKPVTEPITTSTSSTSATTTLKTS 259


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = -1

Query: 412 RRQFEQSARAEARDRTGRSCACVARTRS-------ACGPRRERRHDQSQDPRCPAKDP 260
           ++Q +   + + + +   + A  A  +S       A GP +E+R   S+DP  PA  P
Sbjct: 480 QKQMQAGLQVQQQQQAAAAAAAAAAQKSPPTPPPPAPGPHKEQRRSTSKDPPRPAPPP 537


>U49941-4|AAP46282.1|  271|Caenorhabditis elegans Hypothetical
           protein K10B3.6c protein.
          Length = 271

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 79  TSAWTFNERRNAFYLNQHGEGL 144
           T  W  NE+ +  Y   HGE L
Sbjct: 223 TDGWILNEKESVVYFRIHGEAL 244


>U49941-3|AAP46281.1|  451|Caenorhabditis elegans Hypothetical
           protein K10B3.6b protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 79  TSAWTFNERRNAFYLNQHGEGL 144
           T  W  NE+ +  Y   HGE L
Sbjct: 223 TDGWILNEKESVVYFRIHGEAL 244


>U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical
           protein K10B3.6a protein.
          Length = 757

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 79  TSAWTFNERRNAFYLNQHGEGL 144
           T  W  NE+ +  Y   HGE L
Sbjct: 223 TDGWILNEKESVVYFRIHGEAL 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.131    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,767,048
Number of Sequences: 27780
Number of extensions: 161156
Number of successful extensions: 567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)