Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K10
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 31 0.10
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.23
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 29 0.23
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 29 0.40
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 1.2
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer... 27 1.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.2
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 26 2.2
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 26 2.2
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 2.9
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||... 25 3.8
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 3.8
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 6.6
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 6.6
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 25 6.6
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 24 8.7
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 24 8.7
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 24 8.7
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 24 8.7
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 30.7 bits (66), Expect = 0.10
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 108 KSPRFRRT---PGKKTPTRLTSGKRTPMKSPKTRSGGSSKKKAMMRLLLDSEN 257
K P F R+ P K PTR+ S K T T GSS K M+ + SEN
Sbjct: 212 KRPAFTRSATSPDKILPTRIKS-KDTVSSGDSTPLSGSSSSKGMLMSMSTSEN 263
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.23
Identities = 30/115 (26%), Positives = 45/115 (39%)
Frame = +3
Query: 18 SASTISEKAQTSTSKMVLIDRKKFISSAERKSPRFRRTPGKKTPTRLTSGKRTPMKSPKT 197
S+ST S A TSTS L SS+ +P + + LTS + P T
Sbjct: 193 SSSTFSSAAPTSTSSSYLSSSSVVSSSS---------SPSSSSSSTLTSSSLSTSSIPST 243
Query: 198 RSGGSSKKKAMMRLLLDSENITRTQPSRETLKRALFVSPENRNGSQTLSSSVPSN 362
S SS ++ S + + S + + S + S T+SSS S+
Sbjct: 244 SSSSSSTSSSLSS-SSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSS 297
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 29.5 bits (63), Expect = 0.23
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 144 TPTRLTSGKRTPMKSPKTRSGGSSKKKAMMRLLL--DSENI 260
TP + + K+ PK +GG+SK+KA R ++ DSEN+
Sbjct: 93 TPEPVVTSKKNSRSKPK--NGGASKRKASRRTVVDEDSENL 131
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 28.7 bits (61), Expect = 0.40
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 30 ISEKAQTSTSKMVLIDRKKFISSAERKSPRFRRTPGKKTP 149
+SEK T T+ + D K SSA+R + R T GK P
Sbjct: 18 VSEKQHTDTALNISQDNKTSSSSAKRGAKGRRGTKGKSGP 57
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 246 DSENITRTQPSRETLKRALFVSPENRNGSQTLSSSVPSNVMKSMQRIFGSPIRQAETKSS 425
D+E + QP+ T +L ++ + S + S S+V K+ +++ SP A K++
Sbjct: 153 DTEEVASIQPALSTSVSSLSLASTAMSKSASASEFSGSSVTKASKKLTSSPTSVASKKAT 212
>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 250
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 379 CIDFITFDGTEELRVWEPFLFSGLTKRARFNVSLD 275
C F TF T L + F+ GLT+ ARFNVS++
Sbjct: 131 CCGFQTFLDTVILSL---FVLCGLTRLARFNVSVN 162
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 1.2
Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = +3
Query: 105 RKSPRFRRTPGKKTPTRLTSGKRTPMKSPKTRSGGSSK----KKAMMRLLLDSENITRTQ 272
R S + T TP+ +S + S ++S SSK + + S + +++
Sbjct: 140 RTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199
Query: 273 PSRETLKRALFVSPENRNGSQTLSSSVPSNVMKSMQRIFGSPIRQAETKSSD 428
S + ++ +++ S+ SSS ++ + G+ + A+T S+D
Sbjct: 200 SSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTASTD 251
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 2.2
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
Frame = +3
Query: 75 DRKKFISSAERKSPRFRR--TPGKKTPTRLTSGKRTPMKSPKTRSGGSSKKKAMMRLLLD 248
D FI +E P + TP + TS P+ +P ++ K +++
Sbjct: 53 DNLGFIEQSETVHPENEKALTPDLRDTKIHTS---LPITTPFSKKRAREAKNILLKPFKS 109
Query: 249 SENITRTQPSRET-LKRALFVSPENRNGSQTLSSSVPS------NVMKSMQRIFGSPIRQ 407
T + +T LK +L V+ N + + T S V S N +K +R+F SPI
Sbjct: 110 PLRQTASPQVADTNLKPSLAVTNLNSDETNTSSEPVTSPLRTTPNSIKRQKRLFKSPISN 169
Query: 408 AETKSSD 428
SD
Sbjct: 170 CLNPKSD 176
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 303 FVSPENRNGSQTLSSSVPSNVMKSMQRIFGSPIRQAETKS 422
F PE GS + S+ N+MK M +I + + + E K+
Sbjct: 185 FYLPERFKGSPDMQSTDLDNLMKEMNQIRDADLEKNEKKA 224
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 2.9
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 90 ISSAERKSPRFRRTPGKKTPTRLTSGKRTPMKSPKTRSGGSSKKKAMMRLLLDSENITRT 269
+S K + R+T GK++ R S K+ K K + KKK+ L DS R
Sbjct: 120 VSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDK----LKKKSKRLKLDDSHTQKRK 175
Query: 270 QPSRE 284
+ R+
Sbjct: 176 RKVRD 180
>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 25.4 bits (53), Expect = 3.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 30 ISEKAQTSTSKMVLIDRKKFISSAERKSPRFRRTPGKKTPTRLTSGKRTPMK 185
I E+ T SK+ ++K ISS E ++ PG+ +T G ++ K
Sbjct: 69 IFERIATEASKLAAYNKKSTISSREIQTAVRLILPGELAKHAVTEGTKSVTK 120
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 3.8
Identities = 24/111 (21%), Positives = 51/111 (45%)
Frame = +3
Query: 33 SEKAQTSTSKMVLIDRKKFISSAERKSPRFRRTPGKKTPTRLTSGKRTPMKSPKTRSGGS 212
++K ++ +S++ L F+S+ + R RR ++ +S ++ ++ +T+ GG
Sbjct: 69 NQKNRSYSSEIYLHSDTNFLSNFDSAYERVRRLLNQQGGK--SSLQKKEVEQIETQEGGD 126
Query: 213 SKKKAMMRLLLDSENITRTQPSRETLKRALFVSPENRNGSQTLSSSVPSNV 365
+ K + DS+ +R Q E + AL E+ + S S N+
Sbjct: 127 NAKGSPSSENKDSDRNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKSDNL 177
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 152 STDLRQENTNEVTENTQRWFQQEESNDEAAAGL*KYYQDATIKRNVKASSL 304
S + N+++V +T + SN + + YY AT+K+ +K+ +L
Sbjct: 145 SAKREKNNSHQVEADTNNATEMVSSNAKKSV-YPLYYDSATVKKGLKSGTL 194
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 6.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 128 YAGEENAYSTDLRQENTNEVTENTQRWFQQ--EESNDEAAAGL 250
Y +EN Y T++ E +N ++ QQ +ND+A GL
Sbjct: 18 YENKENEYQTNITNETSNVQNLSSGNDDQQYPNSTNDDANNGL 60
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 24.6 bits (51), Expect = 6.6
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +2
Query: 95 FRGKEEPSI*AYAGEENAYSTDLRQENTNEVTENTQRWFQQEESNDEAAAGL*KYYQDAT 274
FR PS+ A A + + ++TNE E +++ Q L QD
Sbjct: 126 FRSVSAPSLSALATQAQRNVSKTLPQSTNETIEKLRQFLQTRYQPATKFLDLGNLQQDPL 185
Query: 275 IKR-NVKASSLCESRKQKRFP 334
+K+ + A + S K K FP
Sbjct: 186 LKQMGILAEA---STKSKMFP 203
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 407 LSDWGTEYTLHRLHNIRWYRRTQSLGTV 324
LS W LH L I W ++LG V
Sbjct: 532 LSPWNMMIVLHGLTTIGWILSRENLGIV 559
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 24.2 bits (50), Expect = 8.7
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +3
Query: 93 SSAERKSPRFRRTPGKKTPTRLTSGKRTPMKSPKTRSGGS-SKKKAMMRLLLDSENITRT 269
SS R +P+ +KTP ++ +RT K R+ S + L + S R
Sbjct: 95 SSERRHTPQTNSQKSQKTPRLSSNKRRTLKNDAKQRNSQSPGTDTSDANLTIQSIEAPRR 154
Query: 270 QPSRETLKRALFVSPENRNGSQTLSSSV 353
P R + F +P+ R S S +
Sbjct: 155 APQR----LSDFFTPDGRRVSNIRDSLI 178
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 83 KIYKFRGKEEPSI*AYAGEENAYSTDLRQENTNEVTENTQ 202
K+ F +E + A EE +YS ENT E+ E ++
Sbjct: 93 KLENFENQENEADEA-ENEETSYSEQNHTENTEEIAEESR 131
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 24.2 bits (50), Expect = 8.7
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +3
Query: 15 CSASTISEKAQTSTSKMVLIDRKKFISSAERKSPRFRRTPGKKTPTRLTSGKRTPMKSPK 194
C S I K T K + R+K + E + R+R+ + T ++ S PK
Sbjct: 518 CDWSKIIPKEVLLTFKSEISKRRKQRKAQEMREERYRQRAERDTEEQIYSELNMQRPVPK 577
Query: 195 T 197
T
Sbjct: 578 T 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,962
Number of Sequences: 5004
Number of extensions: 34800
Number of successful extensions: 123
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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