Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K09
(494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 209 2e-55
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 137 7e-34
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 132 2e-32
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 120 9e-29
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 118 5e-28
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 113 2e-26
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 99 2e-22
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 85 4e-18
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 52 4e-08
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.072
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 31 0.13
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 1.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 3.6
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 4.7
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 25 4.7
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 25 4.7
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 4.7
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 4.7
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 25 6.3
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 25 6.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.3
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 8.3
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 209 bits (511), Expect = 2e-55
Identities = 100/157 (63%), Positives = 125/157 (79%)
Frame = +3
Query: 24 QPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDG 203
Q +++L+EGTD +QG+ QL+SNINAC V D +RTTLGP G DKL+VD G+ VISNDG
Sbjct: 7 QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 204 ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIV 383
ATIMKLLDIVHPAAKTLVDIA++QDAEVGDGTTSVV+ AGELL+ R FVE+GV +I+
Sbjct: 67 ATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLII 126
Query: 384 RAVRTAAKLAVDNVKELAVKIDKKSPEEQRELLRKCA 494
R R AA+LAV+ +KE+A+ +D + R+LL KCA
Sbjct: 127 RGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCA 163
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 137 bits (332), Expect = 7e-34
Identities = 68/137 (49%), Positives = 95/137 (69%), Gaps = 2/137 (1%)
Frame = +3
Query: 60 QTQGKPQLI--SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIV 233
Q + KPQ + SNI A + V DA+RT+LGP+GMDK+I G+ +++NDGATI+K L ++
Sbjct: 12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71
Query: 234 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVRTAAKLA 413
HPAAK LVD++ +QD E GDGTTSVVILAG +L +++G+HP VI + + AA
Sbjct: 72 HPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFT 131
Query: 414 VDNVKELAVKIDKKSPE 464
VD +KE A+ I+ E
Sbjct: 132 VDCMKENALAIELSDRE 148
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 132 bits (320), Expect = 2e-32
Identities = 58/157 (36%), Positives = 101/157 (64%)
Frame = +3
Query: 21 MQPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISND 200
MQ + ++ ++ G +SNI A + V D +RT LGPR M K+++D G +++ND
Sbjct: 1 MQSPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60
Query: 201 GATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVI 380
G I++ +++ HPAAK+++++A++QD EVGDGTTSV+ILAGE+L P ++ +HP V+
Sbjct: 61 GHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVM 120
Query: 381 VRAVRTAAKLAVDNVKELAVKIDKKSPEEQRELLRKC 491
+R+ + A + A+ + E+ + ++ E L+R C
Sbjct: 121 IRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRTC 157
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 120 bits (290), Expect = 9e-29
Identities = 58/137 (42%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Frame = +3
Query: 57 DQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVH 236
++ G+ N+ A + + V+++LGP G+DK++VD G ++NDGATI+ LLD+ H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 237 PAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVRTAAKLAV 416
PA K LV++A+ QD EVGDGTTSVVI+A ELL+R V+ +HP I+ R A + AV
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 417 DNVKE-LAVKIDKKSPE 464
+ + L+ +D E
Sbjct: 135 KFMTDVLSCSVDSLGKE 151
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 118 bits (284), Expect = 5e-28
Identities = 62/160 (38%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Frame = +3
Query: 9 RNIKMQPQILLL-REGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKA 185
R+ + P IL+ +E + G + S+I A + V + VRT+LGPRG+DK+++ G+
Sbjct: 11 RDDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEI 70
Query: 186 VISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGV 365
++NDGATI+ +++ H AK LV ++KSQD E+GDGTT VV+LAG LL++ +++G+
Sbjct: 71 TVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGI 130
Query: 366 HPRVIVRAVRTAAKLAVDNVKELAVKIDKKSPEEQRELLR 485
HP I A ++AV ++ ++ +D SPE L R
Sbjct: 131 HPIRIADGYEKACQVAVKHLDAISDVVD-FSPENTTNLFR 169
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 113 bits (271), Expect = 2e-26
Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Frame = +3
Query: 39 LLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHS-GKAVISNDGATIM 215
+ E Q +G+ +S+ V D V++TLGP+GMDK++ +S G V++NDGATI+
Sbjct: 8 IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Query: 216 KLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVR 395
K + + + AAK LV+I+K QD EVGDGTTSV + A ELL++ V +HP+VI+ R
Sbjct: 68 KSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYR 127
Query: 396 TAAKLAVDNVKELAVKIDKKS-PEEQRELLRKCA 494
A K A+D ++ A ID S P + R L A
Sbjct: 128 IATKTAIDALR--ASSIDNSSDPAKFRSDLENIA 159
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 99 bits (238), Expect = 2e-22
Identities = 52/151 (34%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Frame = +3
Query: 39 LLREGTDQTQG-KPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIM 215
L REG QG + +I N NA + + + RT+LGP G +K++V+H + ++ND ATI+
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 216 KLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVR 395
+ L+++HPAAK +VD + Q+ E+GD VV+ GELL + + G+ P I +
Sbjct: 73 RELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYE 132
Query: 396 TAAKLAVDNVKELAVKIDK-KSPEEQRELLR 485
A ++ ++E+ DK ++ E ++EL++
Sbjct: 133 MALSHTMEVLEEICA--DKIETVESEKELIK 161
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 85.4 bits (202), Expect = 4e-18
Identities = 42/114 (36%), Positives = 65/114 (57%)
Frame = +3
Query: 39 LLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMK 218
LL + Q L NI+A + D +++ LGP G K++VD +G ++ DG ++
Sbjct: 4 LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63
Query: 219 LLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFVEEGVHPRVI 380
+ I +P A + A +QD GDGTTSV +L GELLK+ ++ EG+HP +I
Sbjct: 64 EMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLI 117
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 52.4 bits (120), Expect = 4e-08
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Frame = +3
Query: 120 AVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDI----VHPAAKTLVDIAKSQDAEV 287
AV TLGP+G + LI G I+ DG T+ + + + + A+ + D+A +
Sbjct: 57 AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVA 116
Query: 288 GDGTTSVVILAGELLKRLRPFVEEGVHPRVIVRAVRTAAKLAVDNVKEL--AVKIDKKSP 461
GDGTT+ +L + V G +P + R + +LAVDNV E A K D +
Sbjct: 117 GDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGI----QLAVDNVVEFLQANKRDITTS 172
Query: 462 EE 467
EE
Sbjct: 173 EE 174
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.5 bits (68), Expect = 0.072
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Frame = -2
Query: 424 TLSTANLAAVRTARTITLGW-----TPSSTNGLNLFRSSPAKITTDVVPSPTSAS*DLAM 260
TLST++ + T+ G T SST ++ S + + PTS+S D +
Sbjct: 496 TLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSS 555
Query: 259 STKVFAAG---CTISNSFMMVAPSF-EITALPL*STISLSMPLGPSVVRTASTTSWQALM 92
S ++G +I ++F V+ T+ P +++S+S S +AST+S ++
Sbjct: 556 SITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSIS 615
Query: 91 LDIS 80
IS
Sbjct: 616 SSIS 619
Score = 29.9 bits (64), Expect = 0.22
Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Frame = -2
Query: 466 SSGDFLSIFTANSLTLSTANLAAVRTARTITLGWTPSSTNGLNLFRSSPAKITT---DVV 296
SS DF S T S +S++++ + ++ + L + SS + +L SS + +T
Sbjct: 549 SSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSAST 608
Query: 295 PSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITALPL*STISLSMPLGPSVVRTAS 116
SP+S S ++ S+ + ++ ++S M+ + S + + S+ ++P+ S+ +S
Sbjct: 609 SSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSS 668
Query: 115 T 113
+
Sbjct: 669 S 669
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 30.7 bits (66), Expect = 0.13
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 402 QRYGRLER*L*DGPLLQQTASISSEVHQLRLQPM*YHHR 286
+R LE+ L + Q A + +V QL+L+P YHH+
Sbjct: 444 ERIQALEKQLGEKEAPSQVAGLKQQVEQLKLEPFKYHHQ 482
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -2
Query: 391 TARTITLGWTPSSTNGLNLFRSSPAKITTDVVPSPTSAS 275
T T+T G+T + T+ + + + TT V+ +PT+ +
Sbjct: 797 TVTTVTTGYTGTETSTVTVIPTGTTGTTTVVIQTPTTVT 835
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 2.7
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = -2
Query: 439 TANSLTLSTA-NLAAVRTARTITLGWTPSSTNGLNLFRSSPAKITTDVVPSPTSAS*DLA 263
++ +T STA N + T+ ++ TP T+ L S+P +T + SP S +
Sbjct: 1604 SSTPITSSTALNTSTPITSSSVLNSSTP-ITSSTVLNSSTPITSSTALNTSPPITSSTVV 1662
Query: 262 MSTKVFAAGCTISNSFMMVAPSFEITALPL*STISL--SMPLGPSVVRTASTTSWQALML 89
S+ + ++ S + + + ++ P+ S+ +L S P+ S V +ST + ++
Sbjct: 1663 NSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVV 1722
Query: 88 DIS 80
+ S
Sbjct: 1723 NTS 1725
Score = 25.4 bits (53), Expect = 4.7
Identities = 27/93 (29%), Positives = 40/93 (43%)
Frame = -2
Query: 358 SSTNGLNLFRSSPAKITTDVVPSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITAL 179
SS+ G+ SS +K+T++ VPS S TK A TIS+S S T
Sbjct: 3661 SSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSISDTK-SPATVTISSSSGQFTHSTFSTGS 3719
Query: 178 PL*STISLSMPLGPSVVRTASTTSWQALMLDIS 80
+ +T+S + S + T+ A D S
Sbjct: 3720 TMHNTVSHATSTSSSFTTSHLPTNTLASTFDNS 3752
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 3.6
Identities = 22/100 (22%), Positives = 38/100 (38%)
Frame = +3
Query: 54 TDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIV 233
T T + SN N+ LV D + P + + + N A+ + +L+
Sbjct: 218 TTSTNTSTVIPSNPNSVFLV-DCTHSQC-PTDLPNIATTQHSLRYLDNASASAITVLERT 275
Query: 234 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPFV 353
HPAA + + S + D + + + K PFV
Sbjct: 276 HPAASSTMATESSHQSPSADSQAEELSKSQRVAKDDDPFV 315
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 4.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 448 SIFTANSLTLSTANLAAVRTARTITLGWTPSSTNGL 341
SIFT L N+ +RT +LG T S NGL
Sbjct: 394 SIFTEYQLQELHENMGVMRTRMMRSLGETMSKYNGL 429
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 154 SMPLGPSVVRTASTTSWQALM 92
S+PL PSVV+ ST S Q L+
Sbjct: 211 SIPLAPSVVQVLSTFSAQELL 231
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 340 NLFRSSPAKITTDVVPSPTSAS*DLAMSTKVFAAGC 233
NLF + PA ++V+ + + + +A TK+F A C
Sbjct: 109 NLFYNEPAIELSNVINNSLAKNSGIAGPTKIFFANC 144
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 196 FEITALPL*STISLSMPLGPSVV 128
F+I L S+I+ S+PL PS++
Sbjct: 252 FQIAGFMLLSSIAASLPLSPSII 274
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 155 VHAPWAKCCADSINNQLAGIDVRYKLRL 72
VH+P AK + + N +GID+ ++L
Sbjct: 287 VHSPEAKVTENDVENVQSGIDIEKTIQL 314
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 386 SNDNSRMDPFFNKRPQSLQKFTS*DY 309
S DNS ++PF N+ P S F +Y
Sbjct: 176 SIDNSALEPFLNRYPASESLFPVTEY 201
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 481 RSSLCSSGDFLSIFTANSLTLSTAN 407
+SS+ S D LS+ ANS T+ST+N
Sbjct: 279 QSSIQPSDDPLSLEVANSETVSTSN 303
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 8.3
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = -2
Query: 328 SSPAKITTDVVPSPTSAS*DLAMSTKVFAAGCTISNSFMMVAPSFEITALPL*STISLSM 149
SSP+ +T SP+S+S + S+ ++ + S+S + S ++ S+ S S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 201
Query: 148 PLGPSVVRTASTTS 107
S V S+TS
Sbjct: 202 SSSSSSVPITSSTS 215
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 8.3
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -2
Query: 442 FTANSLTLSTANLAAVRTARTITLGWTPSSTNGLNLFRSSPAKITTDVVPSPTSAS*DLA 263
+T+ +T S +++ + + T +T+ L+ S+P T + T+++
Sbjct: 504 YTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPY 563
Query: 262 MSTKVFAAGCTISNSFMMVA-PSFEITALPL*STISLSMPL-GPSVVRTAST-TSWQA 98
ST V ++ TIS+S + + P S + S P+ P+ ++ST SW +
Sbjct: 564 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNS 621
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 8.3
Identities = 21/69 (30%), Positives = 26/69 (37%)
Frame = -2
Query: 481 RSSLCSSGDFLSIFTANSLTLSTANLAAVRTARTITLGWTPSSTNGLNLFRSSPAKITTD 302
R L S F ++ T S L A T L TP LN+ SS
Sbjct: 569 RKPLSSQNTFDTLPTI-SQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPAS 627
Query: 301 VVPSPTSAS 275
V+ P+SAS
Sbjct: 628 VLAPPSSAS 636
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,132
Number of Sequences: 5004
Number of extensions: 38829
Number of successful extensions: 143
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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