Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K09
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.5  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 201 GATIMKLLDIVHPAAKTLVDIAKSQ 275
           G   +KLL+I+H   K ++ + K +
Sbjct: 241 GKNQIKLLEIIHGLTKKVIQLKKEE 265


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 158  ADSGS*RQSSDFK*WSYHH 214
            +DS S R  ++   W YHH
Sbjct: 1663 SDSESGRLDTEMSTWGYHH 1681


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 163 ISLSMPLGPSVVRTASTTSWQALMLDIS 80
           IS    LG  ++RT +  SW +    IS
Sbjct: 137 ISTLYALGAKIIRTPTEASWHSPEAHIS 164


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 377 NSRMDPFFNKRPQSLQKFTS*DYN 306
           N +M+ +       LQKF + DYN
Sbjct: 538 NRQMNEYMMALSMKLQKFINNDYN 561


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 267 WQCRPKFLQ 241
           W CR KFLQ
Sbjct: 926 WSCRCKFLQ 934


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 492 RISLEVPSVPLVTSCLFSQPT 430
           R  +E+P+V L TS     PT
Sbjct: 357 RWMMEIPNVTLPTSTYSGSPT 377


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +2

Query: 119 CCPHNTWP 142
           CCP++T+P
Sbjct: 233 CCPNDTYP 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,299
Number of Sequences: 438
Number of extensions: 2576
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)