Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K07
(541 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 250 4e-67
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 33 0.13
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 33 0.13
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.17
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.17
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.17
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.17
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.17
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.17
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 31 0.70
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 31 0.70
Z70307-12|CAA94340.1| 405|Caenorhabditis elegans Hypothetical p... 28 4.9
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 4.9
AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical ... 28 4.9
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 27 8.6
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 27 8.6
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 250 bits (613), Expect = 4e-67
Identities = 117/176 (66%), Positives = 138/176 (78%)
Frame = +2
Query: 11 DHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNF 190
D WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRLD+GNF
Sbjct: 6 DSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNF 65
Query: 191 AWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKK 370
+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK
Sbjct: 66 SWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKK 125
Query: 371 GAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVQGGLEEQFHTGRLLACVASRTGQ 538
AKL+E + AI+NKKRS T KKY RQ+ + V L EQF+TGRLLA ++S GQ
Sbjct: 126 NAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQ 181
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 33.1 bits (72), Expect = 0.13
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +2
Query: 221 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 391
T+I+ + Y A E + K L+ K +I+ + + +S+ + RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 392 EEAIINKKRSQKTAKKYLSRQRLSKVQGGLEEQFHTGRL 508
++AI ++ + KK L + + SK + LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 33.1 bits (72), Expect = 0.13
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +2
Query: 221 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 391
T+I+ + Y A E + K L+ K +I+ + + +S+ + RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 392 EEAIINKKRSQKTAKKYLSRQRLSKVQGGLEEQFHTGRL 508
++AI ++ + KK L + + SK + LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 164 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 268
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 164 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 268
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 164 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 268
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 164 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 268
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 164 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 268
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 164 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 268
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 30.7 bits (66), Expect = 0.70
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 500 QCGIAPPDHPVPWTGAA-CSGTSSLSFDCV 414
+CG A P +P PW +A C T++ + +C+
Sbjct: 486 KCGCADPRYPKPWKRSAWCDSTNTTTLNCL 515
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 30.7 bits (66), Expect = 0.70
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 500 QCGIAPPDHPVPWTGAA-CSGTSSLSFDCV 414
+CG A P +P PW +A C T++ + +C+
Sbjct: 486 KCGCADPRYPKPWKRSAWCDSTNTTTLNCL 515
>Z70307-12|CAA94340.1| 405|Caenorhabditis elegans Hypothetical
protein C39E9.11 protein.
Length = 405
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 365 KKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVQGGLEE 487
KK K + EE +K+ +K AKK + +++ K+ GG+++
Sbjct: 79 KKALKKAQKEE----RKKEKKLAKKAMKVEKIPKIGGGIQK 115
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 206 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 328
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical
protein C03H5.4 protein.
Length = 160
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 397 FLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTH 266
FL LG LP V I RC HHD + +Y G+G +
Sbjct: 2 FLFPLVLGFLLPETLNTFVLEIQFMTRCMTHHD-AWIYNGYGCY 44
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 300 SWWMPHLSGSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRST*AG 452
S + PHLS S K T HS+ + PSS +KPS + + R R + G
Sbjct: 763 SSYSPHLSVSADKDTMSMHSQTSRRPSS---QKPSYSGSYSARSRGGSSTG 810
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 300 SWWMPHLSGSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRST*AG 452
S + PHLS S K T HS+ + PSS +KPS + + R R + G
Sbjct: 763 SSYSPHLSVSADKDTMSMHSQTSRRPSS---QKPSYSGSYSARSRGGSSTG 810
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +2
Query: 362 RKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVQGGLEE 487
+K G A++ I K+++ KTAKKY +++L++++ L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,799
Number of Sequences: 27780
Number of extensions: 316513
Number of successful extensions: 939
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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