Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K06
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   5.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   7.7  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    24   7.7  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    24   7.7  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   7.7  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 304 TPAPVNELIVKLHFPS 257
           TP P+ +L + +H+PS
Sbjct: 546 TPEPIQDLSIPIHYPS 561


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 161 SPSIRCKTVSKDYLDPFSVNYFRS 90
           S S   K    DY+DPF+++Y R+
Sbjct: 913 SGSFTLKDEYFDYVDPFNIHYSRN 936


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 340 LDSGCIVRDYW 372
           ++SGC+VR YW
Sbjct: 329 VNSGCLVRSYW 339


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 273 LTINSLTGAGVHISTI*KTYPLFGFWVHCT*LLGQQLRGPHYY 401
           +T+N L G+  HI    ++   FG++ +   +L + + G  YY
Sbjct: 117 MTLNGLFGSHYHIPFAVQSRASFGYYFNTLIILLRFIAGLFYY 159


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 272  FDDQLVDRCRRAHLNDLENI 331
            FDD L++RC +  ++D+ +I
Sbjct: 2002 FDDALIERCNKEGVHDVFDI 2021


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,599
Number of Sequences: 5004
Number of extensions: 26232
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)