Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K04
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat... 40 1e-04
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 27 1.3
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 5.4
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 24 7.1
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 24 7.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 24 7.1
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 24 7.1
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 24 7.1
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.4
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 24 9.4
>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
complex beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 40.3 bits (90), Expect = 1e-04
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 192 RGARRRLYTVTAATDDXXXXXXXXXXXXNTIPGIEEVNMIKDDGTVIHFNNPKAQASLAA 371
R ++ + +A DD + GI+EVNM K+DG VI+F P +SL
Sbjct: 23 RKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPN 82
Query: 372 NTLA 383
T A
Sbjct: 83 ETTA 86
Score = 39.5 bits (88), Expect = 2e-04
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +2
Query: 131 MNTEKLKKLQSQVRIGGKGTPRRKKK 208
M+ KL KLQ+ RIGGKGTPRRK K
Sbjct: 1 MDPSKLAKLQAGARIGGKGTPRRKVK 26
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 26.6 bits (56), Expect = 1.3
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 51 ACVNN*IISLKSAARVCRE 107
A VN I SLKSAA+VC E
Sbjct: 637 ATVNQRITSLKSAAKVCSE 655
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 24.6 bits (51), Expect = 5.4
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 337 KCITVPSSFIILTSSMPGMVFTDTFLRDDCNFLSSVAAVTVYN 209
+C+ + SFI+L S + T+ FL F V + Y+
Sbjct: 1238 ECLPIKESFIVLLGSCIKQLKTENFLEYKVTFAKWVEILLSYS 1280
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 221 NSVQPSSCASVYP 183
NSV PSS AS+YP
Sbjct: 693 NSVTPSSSASLYP 705
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 236 VCCRCNS-VQPSSCASVYPYRRCAPATVVSLAFPYSLCYFNVL 111
VC + + V+P + V Y++ A VV F +L Y N L
Sbjct: 683 VCLQTGTGVKPDTSKCVAIYKKAAEMDVVEAMFRIALIYLNGL 725
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 24.2 bits (50), Expect = 7.1
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 140 EKLKKLQSQVRIGGKGTPRRKKKVVHC 220
++++KL+ + + GT + KK+ HC
Sbjct: 798 QQIRKLKDENKKDQSGTDKLMKKIYHC 824
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = -1
Query: 257 RRLQFLIVCCRCNSVQPSSCASVYPYRRCAPATVVSLAFPY 135
+R+Q L++C S P C + P C V + Y
Sbjct: 174 KRMQELVLCGSSESGPPECCICLMPVLPCQALFVAPCSHSY 214
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 150 RNYSRRCASAVRVHRGARRRLYTV 221
RN++R C SA VH + LY +
Sbjct: 167 RNFTRLCRSASSVHISYQNGLYCI 190
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 171 RTCDCSFFSFSVFIMLF*CVKILDRHAQHFSVILF 67
R +FF S+F ++ C + L+ + FS+I F
Sbjct: 62 RNISNTFFKKSIFFFVYYCKQALEFISTVFSIIKF 96
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 GNRR*EIAIVSQKSVSEHHSWH*RGQYD 310
GN + S+K S +HS H +G YD
Sbjct: 401 GNLTTRLLFASKKYWSRNHSSHSQGNYD 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,590
Number of Sequences: 5004
Number of extensions: 27199
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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