Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K04
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264...    58   2e-09
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53...    58   3e-09
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095...    42   2e-04
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988...    30   0.55 
08_02_0795 + 21273453-21273752                                         29   1.3  
11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118     26   8.9  
10_01_0292 - 3032595-3032768,3032912-3033008,3033273-3033280           26   8.9  

>10_08_0411 -
           17725661-17725842,17726066-17726104,17726379-17726435,
           17726524-17726672,17727195-17727262,17727796-17727798
          Length = 165

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
 Frame = +3

Query: 162 RRCASAVRVH-RGA-RRRLYTV--TAATDDXXXXXXXXXXXXNTIPGIEEVNMIKDDGTV 329
           ++ A AVR   +G+ RR+   V  T  TDD            NTIPGIEEVN+ KDD  V
Sbjct: 8   KKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VV 66

Query: 330 IHFNNPKAQASLAANT 377
           I F NPK QAS+ ANT
Sbjct: 67  IQFLNPKVQASIGANT 82



 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = +2

Query: 128 IMNTEKLKKLQSQVRIGGKGTPRRKKKVVH 217
           +MN +KLKK+   VR GGKG+ RRKKK VH
Sbjct: 1   MMNVDKLKKMAGAVRTGGKGSVRRKKKAVH 30


>03_01_0067 -
           538929-539143,539306-539344,539579-539635,539727-539875,
           540298-540365,542009-542093,542185-542246,542612-542700,
           543034-543088,544127-544252,544477-544576,544697-545499
          Length = 615

 Score = 57.6 bits (133), Expect = 3e-09
 Identities = 35/76 (46%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
 Frame = +3

Query: 162 RRCASAVRVH-RGARRRLYTV---TAATDDXXXXXXXXXXXXNTIPGIEEVNMIKDDGTV 329
           ++ A AVR   +G+ RR       T  TDD            N IPGIEEVN+ KDD  V
Sbjct: 447 KKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIFKDD-VV 505

Query: 330 IHFNNPKAQASLAANT 377
           I F NPK QAS+ ANT
Sbjct: 506 IQFQNPKVQASIGANT 521



 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 131 MNTEKLKKLQSQVRIGGKGTPRRKKKVVH 217
           MN +KLKK+   VR GGKG+ RRKKK VH
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVH 469


>03_06_0698 +
           35608666-35608709,35608810-35608958,35609493-35609531,
           35610024-35610163,35611130-35611244,35611281-35611399,
           35611413-35611979
          Length = 390

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 22/43 (51%), Positives = 23/43 (53%)
 Frame = +3

Query: 222 TAATDDXXXXXXXXXXXXNTIPGIEEVNMIKDDGTVIHFNNPK 350
           T  TDD            NTIP IEEVN+ KDD  VI F NPK
Sbjct: 23  TGTTDDKRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNPK 64



 Score = 32.7 bits (71), Expect = 0.10
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +2

Query: 167 VRIGGKGTPRRKKKVVH 217
           VR GGKGT RRKKK VH
Sbjct: 5   VRTGGKGTVRRKKKAVH 21


>04_03_0588 +
           17595299-17596151,17597519-17597665,17598562-17598837,
           17599108-17599805
          Length = 657

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -1

Query: 197 ASVYPYRRCAPATVVS-LAFPYSLCYFNVLKFSTDTRST 84
           +S+Y + RCA A +V   +F +S+ Y +  KF++DT S+
Sbjct: 182 SSMYTWNRCAYAALVEESSFNFSMIYDSSSKFNSDTVSS 220


>08_02_0795 + 21273453-21273752
          Length = 99

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 263 FERRLQFLIVCCRCNSVQPSSCASVYPYRRCAP 165
           F RR+  +  CC C++   ++ A  + +R C+P
Sbjct: 55  FHRRVVVVQQCCACDTAAAAAAAGGWEWRDCSP 87


>11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118
          Length = 325

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 233 CCRCNSVQPSSCASVYPYRRC 171
           CC      PSSC S   +RRC
Sbjct: 304 CCAFKLPSPSSCCSCSCFRRC 324


>10_01_0292 - 3032595-3032768,3032912-3033008,3033273-3033280
          Length = 92

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 207 FFLRLGVPLPPMRTCDCSFFSFSVFIML 124
           F L L +P P M TC C F S    I++
Sbjct: 15  FSLVLAIPAPIMLTCMCPFSSMFYMIIV 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,602,197
Number of Sequences: 37544
Number of extensions: 172103
Number of successful extensions: 380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)