Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K04
         (383 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    71   3e-13
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr...    27   4.5  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 70.9 bits (166), Expect = 3e-13
 Identities = 33/61 (54%), Positives = 39/61 (63%)
 Frame = +3

Query: 201 RRRLYTVTAATDDXXXXXXXXXXXXNTIPGIEEVNMIKDDGTVIHFNNPKAQASLAANTL 380
           ++++   TAA DD              IPGIEEVNMIKDDGTVIHFNNPK Q S+ ANT 
Sbjct: 31  KKKVIHKTAAADDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTF 90

Query: 381 A 383
           +
Sbjct: 91  S 91



 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 22/29 (75%), Positives = 26/29 (89%), Gaps = 3/29 (10%)
 Frame = +2

Query: 140 EKLKKLQSQ---VRIGGKGTPRRKKKVVH 217
           E++KKLQ+Q   VRIGGKGTPRRKKKV+H
Sbjct: 8   ERIKKLQAQQEHVRIGGKGTPRRKKKVIH 36


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 191 VYPYRRCAPATVVSLAFPYSLCYFNVLKFS 102
           VY Y+   P    +L FP   C++ ++KF+
Sbjct: 41  VYVYKTNRPKEEKALLFPIINCFYKIMKFT 70


>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
           protein C36B1.8b protein.
          Length = 1052

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +2

Query: 122 NNIMNTEKLKKLQSQVRIGGKGTPRRKKKVVHCYSGNRR*EIAIVSQKSVSEHHSWH*RG 301
           N +  T      QS    G     R K+K  + +SGNR+      SQ + + HHS H  G
Sbjct: 158 NELEKTSNTANSQSGAFKGTTNKDRPKEKEKNTHSGNRQ------SQVNHNHHHSNHVSG 211

Query: 302 QYDKR 316
               R
Sbjct: 212 NQQNR 216


>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
           protein C36B1.8a protein.
          Length = 1049

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +2

Query: 122 NNIMNTEKLKKLQSQVRIGGKGTPRRKKKVVHCYSGNRR*EIAIVSQKSVSEHHSWH*RG 301
           N +  T      QS    G     R K+K  + +SGNR+      SQ + + HHS H  G
Sbjct: 158 NELEKTSNTANSQSGAFKGTTNKDRPKEKEKNTHSGNRQ------SQVNHNHHHSNHVSG 211

Query: 302 QYDKR 316
               R
Sbjct: 212 NQQNR 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,535,080
Number of Sequences: 27780
Number of extensions: 162280
Number of successful extensions: 375
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)