Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K03
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 91 5e-20
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 72 4e-14
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 27 1.2
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 1.6
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 26 2.1
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 26 2.8
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 25 4.8
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 25 4.8
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 25 4.8
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 25 4.8
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 24 8.5
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 91.5 bits (217), Expect = 5e-20
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 14/148 (9%)
Frame = +3
Query: 21 LSVNVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 194
L++ + P VLF I+D R++ ++ RVIGTLLGT D +E+ +CF VPH E ++QVE
Sbjct: 21 LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80
Query: 195 AELNYAMDVYELNRRVNASENLVGWWATGNEVTNHSSVIHEYYSRECREP---------- 344
E+ Y +Y L+ + N E +VGW+AT ++ S++I Y+ EP
Sbjct: 81 VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPH 139
Query: 345 --VHVTLDTSLQGGRMGLRAYVCVALGV 422
VH+T++T + + ++ YV +G+
Sbjct: 140 PCVHLTVNTDV-SSPLAIKTYVSSPVGI 166
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 71.7 bits (168), Expect = 4e-14
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Frame = +3
Query: 27 VNVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 197
V VHP+VL VD+Y R RV+G LLG ++ VV V N + +P +E
Sbjct: 17 VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76
Query: 198 -ELNYAMDVYELNRRVNASENLVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLQ 374
+ N+ + E+ +++NA+E LVGW+ TG ++ I+ + PV V +D +
Sbjct: 77 LDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPK 136
Query: 375 GGRMGLRAYVCV 410
+ AY +
Sbjct: 137 SVGLPTNAYFAI 148
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 263 WLVGHRK*GDQSFLGNSRVLFSGVPGAGARDAGHV 367
W++G R+ + F+G+SR+L G R G +
Sbjct: 277 WIIGKRRRKEGGFVGSSRILKELKDGPSRRRVGFI 311
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 69 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 194
Y+ R DSHR I L GT + + + + +K H ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 2.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 206 IKFGLDLVSVLFVRHAEAVCHFHDSL 129
+K G+D++ F+R AE V H + L
Sbjct: 210 VKNGVDMIFASFIRRAEDVIHIREVL 235
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 2.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 168 HKEHADQVEAELNYAMDVYELNRRVNASENLVGWWATGNEVTNHSSV 308
H+E Q + LN+ N N+ +NL ++ N + H SV
Sbjct: 113 HEEIHHQQQLHLNHQYQHQHKNVAANSIDNLSRQYSQPNHINTHDSV 159
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 166 GTQKQFVTSTTPLSLVPNNV 107
GTQ+ FV TT + PNNV
Sbjct: 187 GTQQNFVRQTTKYWVHPNNV 206
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 4.8
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 99 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE---LNYAMDVYELNRRVNASENLVGW 269
V+G + G + + + + F +P + +V A Y++ + L + V EN++GW
Sbjct: 57 VMGYVQGKVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGW 116
Query: 270 W 272
+
Sbjct: 117 Y 117
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 4.8
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 15 LNLSVNVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKEH 179
LN+ + +V+ ++++ ++RN D H I + TSD ++ + N F + H
Sbjct: 253 LNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVAH 312
Query: 180 AD 185
D
Sbjct: 313 RD 314
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 4.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 231 NRRVNASENLVGWWATGNEVTNHSSVIHE 317
NR +N + L ++TGNEVT SS + E
Sbjct: 8 NRSLNPTRGL-NLYSTGNEVTWFSSTVDE 35
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 24.2 bits (50), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 186 QVEAELNYAMDVYELNRRVNASENLVG 266
++ AEL Y D+ L R N S+N G
Sbjct: 350 ELSAELAYKEDLTSLASRANISDNSTG 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,237
Number of Sequences: 5004
Number of extensions: 30172
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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