Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_K03
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 117 3e-27
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 60 1e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 51 4e-07
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 34 0.041
03_05_0751 - 27389910-27392105 33 0.13
11_06_0160 - 20794974-20795977,20796241-20796295 28 2.7
06_03_1269 + 28865236-28865819,28866124-28866754 27 6.2
01_01_0433 + 3282195-3285185 27 6.2
07_01_0579 + 4299104-4299652,4300845-4300935,4301018-4301211,430... 27 8.2
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 27 8.2
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 117 bits (282), Expect = 3e-27
Identities = 55/128 (42%), Positives = 81/128 (63%), Gaps = 1/128 (0%)
Frame = +3
Query: 24 SVNVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 200
S V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 201 LNYAMDVYELNRRVNASENLVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLQGG 380
+ Y ++Y + +VN E +VGW++TG V+ S++IH++YSRE + P+H+T+DT G
Sbjct: 78 IEYHHNMYASHHKVNPKEVIVGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRG 137
Query: 381 RMGLRAYV 404
++AY+
Sbjct: 138 DASIKAYI 145
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 59.7 bits (138), Expect = 1e-09
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +3
Query: 27 VNVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 194
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 195 AELNYAMDVYELNRRVNA 248
+ NY ++ + +R+NA
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 50.8 bits (116), Expect = 4e-07
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 99 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNASENLVGWW 272
V G LLG V+EVTNCF P +E ++ +A+ NY +++ R VN N VGW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 34.3 bits (75), Expect = 0.041
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +3
Query: 96 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAM--DVYELNRRVNASENLVGW 269
RV G ++G VE+ N F + D V L+ A EL ++V ++GW
Sbjct: 68 RVFGCVIGVQRGRTVEIFNSFELV----LDPVSGTLDRAFLEKKQELYKKVFPDFYVLGW 123
Query: 270 WATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 371
++TG++V + IH+ PV++ L+ ++
Sbjct: 124 YSTGSDVRDTDMQIHKALMDINESPVYLLLNPAI 157
>03_05_0751 - 27389910-27392105
Length = 731
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -1
Query: 317 LVNYRGMIGHLISCGPPANKVLRCINSSV*FINIHGIIKFGLDLVSVLFVRHAEAVCHF 141
L +R +I ++ P N+VL I I IHGI+ G V R EA+ HF
Sbjct: 560 LYRFRNLIDETVAIDSPRNRVLNTIRQVNPAIFIHGIVN-GSYSVPFFITRFREALFHF 617
>11_06_0160 - 20794974-20795977,20796241-20796295
Length = 352
Score = 28.3 bits (60), Expect = 2.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 303 RNDWSPHFLWPTSQQGSQM 247
R DWSPH+ W + Q +Q+
Sbjct: 93 RQDWSPHYWWARTGQPNQI 111
>06_03_1269 + 28865236-28865819,28866124-28866754
Length = 404
Score = 27.1 bits (57), Expect = 6.2
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -1
Query: 371 QRRVQRHVHRLP-----ALPRIVLVNYRGMIGHLISCGPPANKVLRC 246
+RR + VHR AL R LV+Y + GH+++ G N VL C
Sbjct: 50 RRRRRSRVHRPAETVRRALSR-ALVHYYPLAGHVVAAGDDDNVVLSC 95
>01_01_0433 + 3282195-3285185
Length = 996
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -1
Query: 344 RLPALPRIVLVNYRGMIGHLISCGPPANKVLRCINSSV*FINIHGIIKFGLDLVSVLFV 168
R+P P + + I + CGPP +K C N S + H + D++ LFV
Sbjct: 919 RIPESPHFLTLPNSSFIRNAGLCGPPLSK--ECSNKSTSNVMPHLSEEKSADIILFLFV 975
>07_01_0579 +
4299104-4299652,4300845-4300935,4301018-4301211,
4301501-4301622,4302378-4302856,4303033-4303334
Length = 578
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 239 SSV*FINIHGIIKFGLDLVSVLFVRHAEAVCHFHDSLIASSQ 114
SS +++I I G+D ++V FV+ AE + H + A S+
Sbjct: 276 SSKDWLDIDFGISEGVDFIAVSFVKSAEVINHLKSYIAARSR 317
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 210 AMDVYELNRRVNASENLVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTS--LQGGR 383
A+ ++EL R +++ L GW + G + ++ CR+ V L+ S GG
Sbjct: 32 ALGLWELYRTLDSPWQLSGWTSQGGDPCGRGGEQRPWHGVLCRDSSIVALNISGLGVGGW 91
Query: 384 MGL 392
+GL
Sbjct: 92 LGL 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,358
Number of Sequences: 37544
Number of extensions: 220585
Number of successful extensions: 634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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