Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K03
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    92   1e-19
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    71   5e-13
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...    32   0.19 
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    28   2.4  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 92.3 bits (219), Expect = 1e-19
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 18/156 (11%)
 Frame = +3

Query: 9   MALNLSVNVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPH 170
           MA NL+VNVHP V   +VD + RR      N    + +GTL+G  +KG ++VTNCF +P 
Sbjct: 1   MASNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPF 60

Query: 171 KEHADQVEAELNYAMDVYELNRRVNASENLVGWWATGNEVTNHSSVIHEYYSRECRE--- 341
            E  D +E +  +   +    ++ + +E  VGW+ T +++T+   + H+YY R   E   
Sbjct: 61  NESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASA 120

Query: 342 -----PVHV-TLDTSLQGG---RMGLRAYVCVALGV 422
                P+ V T+DT+  G    RM +RAY+    G+
Sbjct: 121 RRESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGI 156


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 70.5 bits (165), Expect = 5e-13
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
 Frame = +3

Query: 27  VNVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 197
           V VHP+VL  +VD + R  +     RV+G LLG+  K   +++ N F VP  E       
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 198 ---ELNYAMDVYELNRRVNASENLVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTS 368
              +++Y   +Y +  +V A E +VGW+ TG ++  +   I+E   R C  PV V +D  
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAE 160

Query: 369 LQGGRMGLRAYV 404
            +   +   AY+
Sbjct: 161 PKNIGLPTEAYI 172


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +3

Query: 24  SVNVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA- 197
           +VN+  + L +++     R+     V+G +LG   D   + VT+ F +P    +  VE+ 
Sbjct: 28  TVNISSLALLKMLR--HARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESV 85

Query: 198 ELNYAMDVYELNRRVNASENLVGWW 272
           +  Y     +L + V  +EN+VGW+
Sbjct: 86  DPVYQTKHMDLLKLVGRTENVVGWY 110


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
 Frame = +3

Query: 27  VNVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCFC--VPHKEHADQ 188
           V +HP+V+ Q+ + Y R          +V G +LG  +   VE  N F   +  +E A+ 
Sbjct: 14  VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEP 73

Query: 189 VEAELNYAMDVYELNRRVNASENLVGWWATGNE 287
           V     + +   +    V     ++G +  G +
Sbjct: 74  VTFSTEHLLQRADQYLEVFPELQVIGLYCAGED 106


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 120 FPIMFR*LYESPHFDVHMHLLFE 52
           F + F  LY+ P F +H HLL E
Sbjct: 367 FVLYFITLYQKPFFPIHRHLLLE 389


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 126 DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYE 227
           D G  EV   +   H EH    +  + Y++DV E
Sbjct: 103 DNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCE 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,250,920
Number of Sequences: 27780
Number of extensions: 175407
Number of successful extensions: 467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)