Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K02
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3IBS8 Cluster: Iron-sulfur-binding protein, glutamate ...    33   3.6  
UniRef50_Q9VTU0 Cluster: CG5645-PA; n=3; cellular organisms|Rep:...    33   4.7  
UniRef50_A7EZU8 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  

>UniRef50_Q3IBS8 Cluster: Iron-sulfur-binding protein, glutamate
           synthase subunit; n=3; uncultured sulfate-reducing
           bacterium|Rep: Iron-sulfur-binding protein, glutamate
           synthase subunit - uncultured sulfate-reducing bacterium
          Length = 576

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 357 CGLIIKCRPTWGYCGWLHSCFLVTGNMSEGSLYG*LADCCDKCVLC 494
           CG    C   W YC   ++CF+       G+ Y  + + CD C  C
Sbjct: 521 CGRCFGCENCWMYCQ--NTCFVKEQKPKPGAFYSIILEKCDGCKKC 564


>UniRef50_Q9VTU0 Cluster: CG5645-PA; n=3; cellular organisms|Rep:
           CG5645-PA - Drosophila melanogaster (Fruit fly)
          Length = 855

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -3

Query: 425 YKKTRVKPPAVAPRWATLYNKATNKFNNEATLSP*SNTSYVIALRVI*KKNHYGRK 258
           +KK+  KP A  P   T   KA NK NN + ++     +Y I  R   K+  YG+K
Sbjct: 798 FKKSNQKPSAPFPAKKTNNFKAKNKQNNNSGITDDRLKAYGINPRKFHKREKYGKK 853


>UniRef50_A7EZU8 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 538

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 355 INLTMKRHYHHNQTLHT*SRFVLFKKKTITDA-SVCASECP*KSVSVNGSHVNIYHINIS 179
           +N +M  H +H    HT       +K  I D  S C  +    S  +   H NI+ + I 
Sbjct: 294 LNRSMSLHMYHETPKHTTLEHHTVRKAKIEDLNSHCFVDYHWLSCEITKDHSNIWKLGIE 353

Query: 178 FNSIS 164
           F+SIS
Sbjct: 354 FDSIS 358


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,147,418
Number of Sequences: 1657284
Number of extensions: 6352695
Number of successful extensions: 13275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13274
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)