Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K02
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   2.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   3.6  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   4.8  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   8.4  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   8.4  

>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 292 RSAITYEVFDYGDNVASLLNLFVALL 369
           +S +TY  FD  D VA+LL   +ALL
Sbjct: 87  QSFLTYRTFDLFDIVANLLGCSLALL 112


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 477 HSSRPISRIENLHSYSPLQENTSEATRSSPTLGDT 373
           H+  PI +I+    Y+P+Q  TS+A+   PT+  T
Sbjct: 796 HAVPPIHQIKQT-GYAPVQPKTSQASSILPTVPRT 829


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 453 IENLHSYSPLQENTSEATRSSPTLGD 376
           I ++  Y P QE+    T S  TLGD
Sbjct: 858 IASMEKYKPPQESNVTKTNSDSTLGD 883


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 434 IPRYKKTRVKPPAVAPRWATLYNKATNKFNNEAT 333
           +P   + R K P     W   + KAT  +NN+ T
Sbjct: 259 LPAAARKRKKEPPKDATWLFQHAKATAAYNNDIT 292


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 438 SYSPLQENTSEATRSSPTLGDTL 370
           SY PL E+  E  +  P +GD L
Sbjct: 494 SYEPLPESVIEDAKKLPVIGDFL 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,242
Number of Sequences: 5004
Number of extensions: 28947
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)