Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_K02
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0402 - 2934074-2937217                                           28   4.8  
07_03_0887 - 22299783-22300913,22301241-22301569,22301958-22302090     27   8.4  

>02_01_0402 - 2934074-2937217
          Length = 1047

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 381 PTWGYCGWLHSCFLVTGNMSEGSL 452
           P WGYC   +S FL+   M  GSL
Sbjct: 822 PLWGYCIQGNSRFLIYSYMENGSL 845


>07_03_0887 - 22299783-22300913,22301241-22301569,22301958-22302090
          Length = 530

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 339 FIVKFICGLIIKCRPTWGYCGWL 407
           F+V FIC  +     +WG  GWL
Sbjct: 390 FVVLFICAYVAGFAWSWGPLGWL 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,163,739
Number of Sequences: 37544
Number of extensions: 166707
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)