Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_J22
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 39 0.003
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 34 0.075
05_03_0270 - 11337212-11337418,11337448-11337606,11337696-113377... 33 0.100
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 31 0.53
07_03_1605 - 28093235-28094031,28094887-28094974 29 1.6
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 29 1.6
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 29 1.6
06_03_0304 + 19315546-19315656,19315780-19315938,19316045-193161... 29 2.1
05_01_0488 - 4070506-4072277,4072455-4072557 29 2.8
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407... 29 2.8
11_04_0119 - 13645068-13645436 28 3.7
06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895... 28 3.7
02_01_0164 + 1146093-1146119,1146682-1146955,1147309-1147684,114... 28 3.7
03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389 28 5.0
12_02_0312 + 17395716-17398112 27 8.7
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 27 8.7
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 38.7 bits (86), Expect = 0.003
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Frame = +3
Query: 186 YLKQLMIEHEKLHAKLRRNADEIRRLHEIKPIVN----ILEERIALYDSI--ESLKELNK 347
Y+ L E + L AK+ + + +R EI+ + +LE+R ALYD L L K
Sbjct: 279 YIASLEEEKDSLRAKIAKLQNNLRMGLEIEQHLQRNARVLEKRQALYDEFMRNGLSTLQK 338
Query: 348 R--EGKDSEMKDMIKHEAEIYLKRINEVDGELQSILITPQVSERRV 479
+ +D MK +++ E+ +NE+ +L I I P+++E V
Sbjct: 339 LHIQQRDDIMK-ILEEESSQLSTVVNEIQDKLSKIRINPEINENPV 383
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 33.9 bits (74), Expect = 0.075
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 147 THSLNLSDPAIQTYLKQLMIEHEKLHAKLRRNADEIRR-LHEIKPIVNILEERIALYDSI 323
T +L L++ K+ E ++++ +L R +E + + +++ V LEERIA DS+
Sbjct: 1389 TDALYLTERQEHDQTKKAFSEAQEINQQLYRKIEEAEKNIEQLRENVERLEERIAYIDSL 1448
Query: 324 ESLKELNKREGKDSEMKDMIKHEAEI 401
+++ E K E+ D K E+
Sbjct: 1449 LAIERRENNETK-KELADAQKEIEEL 1473
>05_03_0270 -
11337212-11337418,11337448-11337606,11337696-11337770,
11337926-11338004,11338096-11338144,11338243-11338426,
11338511-11338609,11338742-11338840
Length = 316
Score = 33.5 bits (73), Expect = 0.100
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 RRLHEIKPIVNILEERIALYDSIESLKELNKREGKDSEMKDMIKHEAEIYLKRINEVDGE 434
+ LH+++ ++++EE + + IE LK L ++ + ++M E L+ ++ +
Sbjct: 46 KELHKLESTMDMIEELRSKQEEIEGLKSLMTNSVEEKDFREMAAQELLQALEEEKQLQHK 105
Query: 435 L-QSILITPQVSERRVLLE 488
L +S+L + ER +LE
Sbjct: 106 LFRSLLPKDEADERDCILE 124
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 31.1 bits (67), Expect = 0.53
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +3
Query: 201 MIEHEKLHAKLRRN-ADEIRRLHEIKPIVNILEERIALYDSIESLKELNKREGKDSEMKD 377
++E E + +L ++ D R+++ ++ VN LEERIA D SL E+ ++E ++ KD
Sbjct: 1310 LVEAESRNRELTKSFEDSDRKINLLEDSVNRLEERIAEKD---SLLEIERQE--NNATKD 1364
Query: 378 MIKHEAEIYLKRINEVDGELQSI 446
+ + ++ +NE +LQ I
Sbjct: 1365 EVTNAQNKIMELVNE-SQQLQDI 1386
>07_03_1605 - 28093235-28094031,28094887-28094974
Length = 294
Score = 29.5 bits (63), Expect = 1.6
Identities = 23/92 (25%), Positives = 44/92 (47%)
Frame = +3
Query: 207 EHEKLHAKLRRNADEIRRLHEIKPIVNILEERIALYDSIESLKELNKREGKDSEMKDMIK 386
E E + +L + D ++ H + + + ++ IE LKE N K S +M+K
Sbjct: 142 EQENMEEELSESEDMMK--HPSQSQADQAAQLELMHAEIEMLKEKNAELQKASAENEMLK 199
Query: 387 HEAEIYLKRINEVDGELQSILITPQVSERRVL 482
+ E L+R++E + L++ L +R V+
Sbjct: 200 QKNE-ELQRVSEENMALKAELAAKDEEKREVI 230
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/64 (28%), Positives = 37/64 (57%)
Frame = +3
Query: 234 RRNADEIRRLHEIKPIVNILEERIALYDSIESLKELNKREGKDSEMKDMIKHEAEIYLKR 413
+R DE+ HE+K ++ E+++ L + ++S KE +R +SEM +K ++ +
Sbjct: 1482 KRQRDEL--YHELK---DVKEQKLCL-ERLDSSKETKRRRKAESEMLSALKKVHDLEHQY 1535
Query: 414 INEV 425
+NE+
Sbjct: 1536 LNEL 1539
>01_07_0053 +
40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 29.5 bits (63), Expect = 1.6
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +3
Query: 69 MSFSR-LIVYRSLLYTNKYTVLIPKCYTHSLNLSDPAIQTYLKQLMIEHEKLHAKLRRNA 245
+SF + + Y++L+ + Y + L+L D IQ +K+++I + L +
Sbjct: 377 LSFQQNMATYQNLITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEIIISYYILMENGKATI 436
Query: 246 DEIRRLHEIKPIVNILEERIALYDSIESLKELNKREGKDSEMKDMIKHEAEIYLKRINEV 425
+++ E +++E L + E + + K E +D I + LKR NE+
Sbjct: 437 EDLDLQCE-----ELIQEEFGLQCNFEVMDAVQKLERLGIITRDSIGRICCLSLKRANEI 491
Query: 426 DG 431
G
Sbjct: 492 IG 493
>06_03_0304 +
19315546-19315656,19315780-19315938,19316045-19316105,
19316620-19316690,19318323-19318622,19319160-19319798,
19320772-19320831
Length = 466
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 333 KELNKREGKDSEMKDMIKHEAEI-YLKRINEVDGELQSILITPQVS 467
K+L ++EG ++ + + H +I L IN++ ELQS L Q++
Sbjct: 408 KKLEQQEGVEANFLNSLDHVQKIEILSGINDMKNELQSFLSISQIN 453
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 28.7 bits (61), Expect = 2.8
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +3
Query: 84 LIVYRSLLYTNKYTVLIPKCYTHSLNLSDPAIQTYLKQLMIEHEKLHAKLRRNADEIRR- 260
L++ L NK T L+ T + + L QL +EH KL A+ AD R+
Sbjct: 506 LLLSEKSLVDNKVTTLLTDITTRDEKMKQ--MDDQLNQLQLEHSKLMAQ----ADLARKS 559
Query: 261 LHEIKPIVNILEERIALYDSIESLKELNKRE 353
L E+ V LE+ + + + S KRE
Sbjct: 560 LSELHARVCELEKEVEMQKLVISESAEGKRE 590
>03_05_1007 -
29637911-29638333,29640095-29640282,29640688-29640773,
29641108-29641173,29641289-29641331,29641398-29642328
Length = 578
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +3
Query: 315 DSIESLKELNKREGKDSEMKDMIKHEA---EIYLKRINEVDGELQSI 446
D E+ E++ EG+ E ++ +KHEA E+ K +++ + EL+++
Sbjct: 211 DDDEARHEVDDDEGRHDEWEERLKHEADGGEVMHKELDDHELELETV 257
>11_04_0119 - 13645068-13645436
Length = 122
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 111 TNKYTVLIP-KCYTHSLNLSDPAIQTYLKQLMI 206
T+ Y+V+ P +C T +N+SD AIQ + L+I
Sbjct: 50 TSNYSVVTPTRCSTVVINISDIAIQVLVAPLII 82
>06_03_0152 +
17287133-17287490,17288541-17288734,17289349-17289557,
17289640-17289742,17290128-17290291,17290554-17290692,
17290908-17291078,17291162-17291298,17291445-17291759,
17291906-17291965,17292372-17292511,17292691-17292788,
17292875-17293387
Length = 866
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 342 NKREGKDSEMKDMIKHEAEIYLKRINEVDGELQSILITPQVSERR 476
N+ K + D K + E+ K EVD EL+S+ T ERR
Sbjct: 420 NQEVPKQLPVSDNKKAKQELISKAREEVDAELRSVSFTLDPKERR 464
>02_01_0164 +
1146093-1146119,1146682-1146955,1147309-1147684,
1149021-1149239,1149572-1149710,1149844-1150092,
1150556-1150855
Length = 527
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 141 CYTHSLNLSDPAIQTYLKQLMIE-HEKLHAKLRRNADEIRRLHEIKPIVNILEERIALYD 317
C+T ++ + D A L M LH AD + R H + PI ++ + L+D
Sbjct: 292 CFTQAIRMWDLAAADSLPSCMRSCFRALHTVTNDIADMVEREHGVNPINHLKKAWAMLFD 351
Query: 318 S-IESLKELNKREGKDSE 368
+ K L+ + DSE
Sbjct: 352 GFMTETKWLSAGQVPDSE 369
>03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389
Length = 711
Score = 27.9 bits (59), Expect = 5.0
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +3
Query: 177 IQTYLKQLMIEHEKLHAKLRRNADEIRRLHEIKPIVNILEERIALYDSIESLKELNKREG 356
IQTYL+ + + E++ K RR++++ H + P L ER+ YD + K +N R G
Sbjct: 406 IQTYLQSMTVRLEEMRVK-RRDSEQWMH-HRLLP--QELRERVRRYD---AYKWVNTR-G 457
Query: 357 KDSEM 371
D E+
Sbjct: 458 VDEEV 462
>12_02_0312 + 17395716-17398112
Length = 798
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +3
Query: 177 IQTYLKQLMIEHEKLHAKLRRNADEIRRLHEIKPIVNILEERI------ALYDSIESLKE 338
I+TY QL I +L K+RR + + + +K ++ EE I + S+ +
Sbjct: 99 IRTYFAQLFIFPFELGRKIRRVRERLNEISALKRNFDLKEEPIDTPSDRIVQRETYSIVD 158
Query: 339 LNKREGKDSEMKDMIK 386
K G+D D++K
Sbjct: 159 ERKIVGRDKAKNDIVK 174
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 283 TIGFISCKRRISSAFLRN--FACSFSCSIINC 194
T GF+S ++ L N +ACS C++I+C
Sbjct: 604 TKGFMSSNKQFEKVDLPNLVYACSLVCNLIHC 635
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,449,815
Number of Sequences: 37544
Number of extensions: 177963
Number of successful extensions: 510
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -